View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5753_high_5 (Length: 362)
Name: NF5753_high_5
Description: NF5753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5753_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 4293029 - 4293367
Alignment:
| Q |
1 |
ctatatctccccctatacttagatatattgagtgcaaattagaagaaggctagataacaagagcatacagtcaaagtttatgatcacacgatttaattaa |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| |
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| T |
4293029 |
ctatatctgcccctatacttagatatattgagtgcaaattagaagaaggctagataacaagagcacacagtcaaagtttataatcacacgacttaattaa |
4293128 |
T |
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| Q |
101 |
gatcacgtattttaagtgtcggctagtagatatcgtttaaatttcctctaatagtggtaaaaattatccttgtttacacnnnnnnncttgcacaacatta |
200 |
Q |
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| T |
4293129 |
gatcacgtattttaagtgtcggctagtagatatcgtttaaatttcctctaatagtggtaaaaattatcctagtttacactttttttcttgcacaacatta |
4293228 |
T |
|
| Q |
201 |
attcaatcaataagtaacgtttaaagcgtctacaagaattatgtgcataggcatgcagaaactctcctaaaatttatgaatttagcgtacgtgagctgtc |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293229 |
attcaatcaataagtaacgtttaaagcgcctacaagaattatgtgcataggcatgcagaaactctcctaaaatttatgaatttagcgtacgtgagctgtc |
4293328 |
T |
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| Q |
301 |
tgagttaggtgaataattccaagagaaacatggatgata |
339 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
4293329 |
tgagttaggtgaataattccaacagaaacatggatgata |
4293367 |
T |
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