View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5753_low_1 (Length: 501)
Name: NF5753_low_1
Description: NF5753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5753_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 28 - 491
Target Start/End: Original strand, 55299923 - 55300386
Alignment:
| Q |
28 |
gtggtgggaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagcataggaatttcttggaag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55299923 |
gtggtgggaagaaacatcaaaacatagataggaacgatatatgttttgttgcattggattgcatggatgtcatcattgcagcataggaatttcttggaag |
55300022 |
T |
|
| Q |
128 |
ctccgactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatgaaagtacctagccc |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300023 |
ctccaactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaagagagaatgaaagtacctagccc |
55300122 |
T |
|
| Q |
228 |
gactcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtgg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300123 |
gactcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggaggaagaacagtggtcattggtgg |
55300222 |
T |
|
| Q |
328 |
ttgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatgctcacctctcttctgatagtccctactacaagggtctcaccg |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55300223 |
ttgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatactcacctctcttctgatagtccctactacaagggtcttaccg |
55300322 |
T |
|
| Q |
428 |
atcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300323 |
atcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatc |
55300386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University