View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5753_low_3 (Length: 375)
Name: NF5753_low_3
Description: NF5753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5753_low_3 |
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| [»] scaffold0001 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 26258888 - 26259235
Alignment:
| Q |
18 |
aattcctccgccgccgcgaatccttcgaccgctggtggttctgcttctgctcccgccgcggtgaaacatgccccacagacgcaggcgttggttgtggcgg |
117 |
Q |
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| T |
26258888 |
aattcctccgccgccgcgaattcttcgaccgctggtggttctgcttctgctcccgccgcggtgaaacatgctccacagacgcaggcgttggttgtggcgg |
26258987 |
T |
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| Q |
118 |
cggagcagcttaagaagaaggagagtgagtgggagagtatggaagctgaaattgaagcggaattcaaagctattagatctcgtgatgcgaatgctcatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26258988 |
cggagcagcttaagaagaaggagagtgagtgggagagtatggaagctgaaattgaagcggaattcaaagctattagatctcgtgatgcgaatgctcatgt |
26259087 |
T |
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| Q |
218 |
tgttcctactcattgtggttaggatctgatcttcatatctcagaaccctaatttgattgcgttttatttttggacttaaattcag--nnnnnnnnnnncc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
26259088 |
tgttcctactcattgtggttaggatctgatcttcatatctcagaaccctaatttgattgcgttttgtttttggacttaaattcagtttttttttttttcc |
26259187 |
T |
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| Q |
316 |
tttcttgttgatgtgaatcaatagtttatgtggttgttgttagctctg |
363 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
26259188 |
tttcttgttgatgtgaatgaatagtttatgtgattgttgttagctctg |
26259235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 146877 - 146991
Alignment:
| Q |
168 |
attgaagcggaattcaaagctattagatctcgtgatgcgaatgctcatgttgttcctactcattgtggttaggatctgatcttcatatctcagaacccta |
267 |
Q |
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||||||| |||||||||||| | ||||||| ||||||| || |||||||||||| || ||||| | |||||||||||||||| ||||||||||||||| |
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| T |
146877 |
attgaagtggaattcaaagcaagtagatctggtgatgctaaatctcatgttgttcttattcattattgttaggatctgatcttgctatctcagaacccta |
146976 |
T |
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| Q |
268 |
atttgattgcgtttt |
282 |
Q |
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||||| ||| ||||| |
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| T |
146977 |
atttgtttgagtttt |
146991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 144553 - 144613
Alignment:
| Q |
18 |
aattcctccgccgccgcgaatccttcgaccgctggtggttctgcttctgctcccgccgcgg |
78 |
Q |
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||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||| |
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| T |
144553 |
aattcctccgccgccgcgaattcttcgaccgccggtggttccgcttctgctcccgcggcgg |
144613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 144607 - 144657
Alignment:
| Q |
114 |
gcggcggagcagcttaagaagaaggagagtgagtgggagagtatggaagct |
164 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
144607 |
gcggcggagcagcttaaggggaaggagagtgagtgggagaatatggaagct |
144657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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