View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5753_low_4 (Length: 375)
Name: NF5753_low_4
Description: NF5753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5753_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 150 - 371
Target Start/End: Original strand, 12196105 - 12196326
Alignment:
| Q |
150 |
ctttggatgagctcgcttttcccaccacctgaagaaacctaagatcgctagacgagcaaatttttctaggaaaatatgcacnnnnnnnacttatatataa |
249 |
Q |
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| T |
12196105 |
ctttggatgagctcgcttttccctccacctgaagaaacttaagatcgctagacgagcaaatttttctaggaaaatatgcactttttttacttatatataa |
12196204 |
T |
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| Q |
250 |
atagatgtaatacacaattcagagatatcttacacatcttaaacttgttgttagagagaacggagaggagaatataaattcatcattgcagaatttgtca |
349 |
Q |
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| T |
12196205 |
atagatgtaatacacaattcagagatatcttacgcatcttaaacttgttgttagagagaacggagaggagaacatagattcatcattgcagaatttatca |
12196304 |
T |
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| Q |
350 |
attcttttattccaggctctag |
371 |
Q |
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||||||||||| |||||||||| |
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| T |
12196305 |
attcttttatttcaggctctag |
12196326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 12195216 - 12195353
Alignment:
| Q |
17 |
actacaaagtttgatgggcgaaccagaggcgaggtcaaagaaaggaattgaagagagtttcatggaagaagcaagtgaacattcgataggaaaacaacat |
116 |
Q |
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| T |
12195216 |
actacaaagtttgatgggcgaaccagaggtgaggtcaaagaaaggaattgaagagggtttcatggaagaagcaagtgaacattcgataggcaaacaacat |
12195315 |
T |
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| Q |
117 |
ttctcctagccaagtaaggcggtgttagtgaccctttg |
154 |
Q |
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| T |
12195316 |
ttctcctagccaagtaaggcggtgttagtgaccctttg |
12195353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 22253816 - 22253673
Alignment:
| Q |
47 |
gaggtcaaagaaaggaattgaagagagtttcatggaagaagcaagtgaacattcgataggaaaacaacatttctcctagccaagtaaggcggtgttagtg |
146 |
Q |
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|||||||||| |||| || ||||||||||| |||||||||||| | | ||||| ||| | |||||||||||| || || ||||||| |||||||| |
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| T |
22253816 |
gaggtcaaagcgaggagttctagagagtttcagggaagaagcaagagcagattcgcgaggcgatcaacatttctccaagaaaaataaggcgatgttagtg |
22253717 |
T |
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| Q |
147 |
accctttggatgagctcgcttttcccaccacctgaagaaaccta |
190 |
Q |
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| T |
22253716 |
accttttggatgagttggcttttcactccatctgaagaaaccta |
22253673 |
T |
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