View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5754_high_1 (Length: 457)
Name: NF5754_high_1
Description: NF5754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5754_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 48976340 - 48976096
Alignment:
| Q |
19 |
gatttttcggtgtaattacagtgaaacccaattcggttcctcgcaattttctcgcggcccaattcaatccacgacttgttttgaaacccaatgcgctgtg |
118 |
Q |
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| T |
48976340 |
gatttttcggtgtaattatagtgaaacccaattcggttcctcgcaattttctcgcggcccaattcaatccacgacttattttgaaacacaatgcgctgtg |
48976241 |
T |
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| Q |
119 |
aaagtgttgggcattagtagggtagtagaaaattgcacacaattgagagagatcaaaatttgaggggttgtgataaagtggctgttgacattattattga |
218 |
Q |
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| T |
48976240 |
aaagtgttgggcattagtagggtagtagaaaattgcacacaattgagagagatcagaatttaaggggttgtaataaagtggctactaacattattattga |
48976141 |
T |
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| Q |
219 |
gtcgatggtatttgcaaggccatcattgcgaataatggctccgaa |
263 |
Q |
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| T |
48976140 |
gtcgatggtatttgcaaggccgtcattgcgaataatggctccgaa |
48976096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 254 - 444
Target Start/End: Complemental strand, 48975725 - 48975535
Alignment:
| Q |
254 |
tggctccgaatgattttctctgctatttcagcaagcggaaactcttcttgggtcacaatatcatgtttgctagtatgttgtaagggctctgatcaagttt |
353 |
Q |
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| T |
48975725 |
tggctccgaaagattttctttgctatttcagcaagcggaaactctttttgggtcacgatatcatgtttgctagtatgttgtaagggctctgatcaagttt |
48975626 |
T |
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| Q |
354 |
gaactcataaaagtaggtgagagatttatgttttaggagttacttcttggttttttctttgaaaatgtcaacttagatttgttgtattttc |
444 |
Q |
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| T |
48975625 |
gaactcataaaagttggtgagagatttatgttttaggagttacttcttggttttttctttgataatgtcaacttagatttgttgtattttc |
48975535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 32118870 - 32118747
Alignment:
| Q |
19 |
gatttttcggtgtaattacagtgaaacccaattcggttcctcgcaattttctcgcggcccaattcaatccacgacttgttttgaaacccaatgcgctgtg |
118 |
Q |
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|||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||| | |||| |||||||||| |||||| |
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| T |
32118870 |
gatttttcagtgtaattagagttaaacccaattcagttcctcgcaattttctcgctgaccaattcaatccacgacctattttcaaacccaatgtgctgtg |
32118771 |
T |
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| Q |
119 |
aaagtgttgggcattagtagggta |
142 |
Q |
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| T |
32118770 |
aatgtgttgggcattagtagggta |
32118747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 32126085 - 32126045
Alignment:
| Q |
29 |
tgtaattacagtgaaacccaattcggttcctcgcaattttc |
69 |
Q |
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| T |
32126085 |
tgtaattagagcgaaacccaattcagttcctcgcaattttc |
32126045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 6006037 - 6005975
Alignment:
| Q |
378 |
tttatgttttaggagttacttcttggttttttctttgaaaatgtcaacttagatttgttgtat |
440 |
Q |
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| T |
6006037 |
tttatgttgtatgagttacttgtaaatttattctttgaaaatgtcaacttagatttgttgtat |
6005975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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