View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5754_low_2 (Length: 248)
Name: NF5754_low_2
Description: NF5754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5754_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 33605801 - 33606033
Alignment:
| Q |
16 |
atacaaacatgatagttctcagctcttgaaagttgttgagtcaaaggataaagcatcaacactcttgaagtttacaacagaataaagcatgagaaagaag |
115 |
Q |
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| T |
33605801 |
atacaaacatgatagttctcagctcttgaaagttgttgagtcaaaggataaagcatcaacactcttgaagtttacaacagaataaagcatgagaaagaag |
33605900 |
T |
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| Q |
116 |
ctagctatagctatctatgactcaagctgagcataccaaacaccttggattttaacatcctttggtgctttagcacccaaatcagtgtcagacggctgaa |
215 |
Q |
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| T |
33605901 |
ctagctatagctatctatgactcaagctgagcataccaaacaccttggattttaacatcctttggtgctttagcacccaaatcagtgtcagacggctgaa |
33606000 |
T |
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| Q |
216 |
tactctcaaacacaccaataacttcaccagtct |
248 |
Q |
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| T |
33606001 |
tactctcaaacacaccaataacttcaccagtct |
33606033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 6963396 - 6963279
Alignment:
| Q |
129 |
tctatgactcaagctgagcataccaaacaccttggattttaacatcctttggtgctttagcacccaaatcagtgtcagacggctgaatactctcaaacac |
228 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| |||||||| |
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| T |
6963396 |
tctatgactcaagctgagcataccaaacaccttgaatcttaacatccttaggagctttagcacctaaatcagtatcagaaggctgaatactttcaaacac |
6963297 |
T |
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| Q |
229 |
accaataacttcaccagt |
246 |
Q |
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| T |
6963296 |
accaataacctcaccagt |
6963279 |
T |
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