View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5755-Insertion-1 (Length: 841)
Name: NF5755-Insertion-1
Description: NF5755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5755-Insertion-1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-138; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 322 - 596
Target Start/End: Complemental strand, 24733874 - 24733604
Alignment:
| Q |
322 |
gagagaaagcaaaataaaactgataccatattatgaataacagaaatagaatcatattattgatgaaagaattaaggagtacaggcaactgatgctatac |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
24733874 |
gagagaaagcaaaataaaactgataccatattatgaataacagaaatagaatcatattattgatgaaagaa----ggagtacatgcaactgatgctatac |
24733779 |
T |
|
| Q |
422 |
aatagaaatggtagactagcaatagcatatcatatcatggctaagacttaatctaaactgagttacttggagtctaagctatctaaatcactattgttat |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24733778 |
aatagaaatggtagactagcaatagcatatcatatcatggctaagacttaatctaaactgagttacttggagtctaagctatctaaatcactattgttat |
24733679 |
T |
|
| Q |
522 |
gtaatactattaaacaacaaattaggaagaaacgtaaatgcaaaatatcaactaagccaaacccacttgaatgtt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24733678 |
gtaatactattaaacaacaaattaggaagaaacgtaaatgcaaaatatcaactaagccaagcccacttgaatgtt |
24733604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 590 - 841
Target Start/End: Complemental strand, 24733560 - 24733310
Alignment:
| Q |
590 |
gaatgtttaggaaggaagaggtctagtgtaggacgttagatacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttg |
689 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24733560 |
gaatgtttaggaaggaagaggtctagtgtaggacgttagatacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttg |
24733461 |
T |
|
| Q |
690 |
atgatacaccaattcgaaaactgagagaggataatccacaaaagtgtgtcgaccccaacaacaccagaaatgtgaaagatatatatagtagctgggcaag |
789 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24733460 |
atgatacaccaattcgaaaactgagagaggataatccacaaaagtgtgtcgaccccaacaacaccagaaatgtgaaagatatatatagtagct-ggcaag |
24733362 |
T |
|
| Q |
790 |
ctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaaca |
841 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
24733361 |
ctcatatcagctgtggatgaaactgtgtgacaacatagagatgtcaaaaaca |
24733310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 588 - 841
Target Start/End: Original strand, 24648492 - 24648749
Alignment:
| Q |
588 |
ttgaatgtttaggaaggaagaggtctagtgtaggacgttaga-----tacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaa |
682 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| | ||| ||| ||||||| |||||||| | ||| |||| ||||||||||||||||||||| |
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|
| T |
24648492 |
ttgaatgtttaggaaggaagaagtctagtgtacgacatgagagttgatacgccaattcaatgcagttagagtgacagaataaagtaaccactaaaacgaa |
24648591 |
T |
|
| Q |
683 |
tgagttgatgatacaccaattcgaaaactgagagaggataatccacaaaagtgtgtcgaccccaacaacaccagaaatgtgaaagatatatatagtagct |
782 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| | |
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|
| T |
24648592 |
tgagttgatgatacaccaattcgagaactgagagatgataatccacaaaagtgtgtcgaccccaacaacaccggagatatgaaagatatatatagtagtt |
24648691 |
T |
|
| Q |
783 |
gggcaagctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaaca |
841 |
Q |
| |
|
||| |||||||||||||||||| ||| |||||| |||| | |||||| ||||||||||| |
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|
| T |
24648692 |
ggg-aagctcatgtcagctgtgaatgcaactgcatgactaaatagagatgtcaaaaaca |
24648749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 641 - 841
Target Start/End: Original strand, 24693152 - 24693351
Alignment:
| Q |
641 |
gatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcgaaaactgagagaggataatccacaaaagtgtgtcg |
740 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || |
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|
| T |
24693152 |
gatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagaactgagagaggataatccacaaaagtgtctca |
24693251 |
T |
|
| Q |
741 |
accccaacaacaccagaaatgtgaaagatatatatagtagctgggcaagctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaac |
840 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24693252 |
catccaacaacaccagaaaagtgaaagatatatatagtagct-ggcaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaac |
24693350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 641 - 841
Target Start/End: Original strand, 24641783 - 24641982
Alignment:
| Q |
641 |
gatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcgaaaactgagagaggataatccacaaaagtgtgtcg |
740 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||| | |||||| ||||| |||||||||||||| || |
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|
| T |
24641783 |
gatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggattatccacaaaagtgtctca |
24641882 |
T |
|
| Q |
741 |
accccaacaacaccagaaatgtgaaagatatatatagtagctgggcaagctcatgtcagctgtggatgaaactgcgtgacaacatagagctgtcaaaaac |
840 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
24641883 |
catccaacaacaccagaaaagtgaaagatatatatagtagct-gacaagctcatatcagctgtggatgaaactgcgtgacaacatagagatgtcaaaaac |
24641981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 628 - 811
Target Start/End: Original strand, 24720682 - 24720867
Alignment:
| Q |
628 |
gatacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcg---aaaactgagagaggataat |
724 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| |||||||| | | |||||| ||||| || |
|
|
| T |
24720682 |
gataaaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaattcctccagatctgagaaaggattat |
24720781 |
T |
|
| Q |
725 |
ccacaaaagtgtgtcgaccccaacaacaccagaaatgtgaaagatatatatagtagctgggcaagctcatgtcagctgtggatgaaa |
811 |
Q |
| |
|
||||| ||| || || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
24720782 |
ccacagaagcgtctcacatccaacaacaccagaaatgtgaaagatatatatagtagct-ggcaagctcatatcagctgtggatgaaa |
24720867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 702
Target Start/End: Complemental strand, 18157824 - 18157753
Alignment:
| Q |
631 |
acaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaat |
702 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |
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|
| T |
18157824 |
acactaattcaatgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaat |
18157753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 25226656 - 25226353
Alignment:
| Q |
7 |
aggtccttcactagaatgaacatagaaagcagaatcagtattacgttattgtttattgttgttgattcgaattgtgaaccatgatgctagaaatcagagg |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| | ||| |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25226656 |
aggtccttcactaggatgaacatagaaagcagaatcagtactcggtt---gttt----ttgttgattcgaattgcgaaccatgatgctagaaatcagagg |
25226564 |
T |
|
| Q |
107 |
aagaagatgaagatcttcaaatcaagagacgc-aaacaacttgcgaaaagaacaaacagaagaatctcaatctgaaattgagaacaaaataagaggaatc |
205 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||| || |||||||||| || | |
|
|
| T |
25226563 |
aagaagatgaagatcttcaaatcaagaaacgcaaaaaaacttgcgaaaggaacaaacagaagaatctcaatgtggaattgagaacgaa-----------c |
25226475 |
T |
|
| Q |
206 |
aaagaagaatcacagggaatcttcaagaaaacaagggaaaaacgaaaactggaaaagcttgaagaacaagcataaattgcggaaacggttatggatcgta |
305 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||| |
|
|
| T |
25226474 |
gaagaagaatcacaaggaatcttcaagaaaacaacggaaaaacgaaaactggaaaagcttgaagaacaagcatcaatgacagaaacaattatggatcgta |
25226375 |
T |
|
| Q |
306 |
actaactttctcatgagagaga |
327 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
25226374 |
actaactctctcatgagagaga |
25226353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 702
Target Start/End: Complemental strand, 15282212 - 15282141
Alignment:
| Q |
631 |
acaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaat |
702 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
15282212 |
acactaattcaatgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaat |
15282141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 702
Target Start/End: Complemental strand, 24223710 - 24223639
Alignment:
| Q |
631 |
acaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaat |
702 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
24223710 |
acactaattcaatgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaat |
24223639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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