View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5755_low_1 (Length: 329)

Name: NF5755_low_1
Description: NF5755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5755_low_1
NF5755_low_1
[»] chr2 (5 HSPs)
chr2 (57-286)||(28742319-28742548)
chr2 (58-254)||(28735269-28735465)
chr2 (58-254)||(28700265-28700464)
chr2 (58-252)||(28783337-28783534)
chr2 (18-63)||(28738822-28738867)
[»] chr1 (2 HSPs)
chr1 (135-246)||(16414496-16414607)
chr1 (154-234)||(16439266-16439346)
[»] chr8 (3 HSPs)
chr8 (58-192)||(10768505-10768639)
chr8 (57-171)||(2050771-2050885)
chr8 (57-171)||(2055180-2055294)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 57 - 286
Target Start/End: Complemental strand, 28742548 - 28742319
Alignment:
Q  57 ccattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggt 156  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||| |||||    
T  28742548 ccattactatcctgcttgtcctgaaccacatttaacgatgggaaccgccaaacattctgatagtagtttcctcacagtgcttcttcaagaccatattggt 28742449  T
Q  157 ggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctctct 256  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |    
T  28742448 ggccttcaagttcttcacaagggaaagtggattgatgtaccaccaatacctgaggctcttgttattaatattggtgatgttctgcaggcaagttctctat 28742349  T
Q  257 tactatattgctatgtgtatttcctgcaac 286  Q
    |||||| |||| |||| |||||||||||||    
T  28742348 tactattttgcaatgtctatttcctgcaac 28742319  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 28735465 - 28735269
Alignment:
Q  58 cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggtg 157  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||| ||| |   |||||| ||||||||| ||||||    
T  28735465 cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatggtagttttctcacagtgcttctccaagaccatattggtg 28735366  T
Q  158 gccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctct 254  Q
    | |||||||||||| || | ||||||||||| |||||||||||  ||||  ||||||||| |||||||||||||||| |||||||||||||||||||    
T  28735365 gtcttcaagttctttaccaagaaaagtggatcgatgtaccaccggtacccgaggctcttgttgttaatattggtgatcttctgcaggcaagttctct 28735269  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 28700464 - 28700265
Alignment:
Q  58 cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagacc--att-ttg 154  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||  |||||| ||| |   |||||| |||||||  ||| |||    
T  28700464 cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatgttagttttctcacagtgcttctccaagaccgtattattg 28700365  T
Q  155 gtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttctct 254  Q
    |||||||||||||||||||| | || |||||||| |||||||||||  ||||   |||||||| ||||||||| |||||| |||||||||||||||||||    
T  28700364 gtggccttcaagttcttcaccaagacaagtggatcgatgtaccaccggtacccggggctcttgttgttaatatcggtgatcttctgcaggcaagttctct 28700265  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 28783534 - 28783337
Alignment:
Q  58 cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagac---cattttg 154  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||| | ||||||||||||||| |||| ||| |   ||||||||||||    ||| |||    
T  28783534 cattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattg 28783435  T
Q  155 gtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgatgttctgcaggcaagttct 252  Q
    ||||||| |||||| ||||| || | |||||||||||| |||| ||||||||| | ||||||| ||||||| |||||||| |||| ||||||||||||    
T  28783434 gtggcctccaagtttttcaccagaacaagtggattgatatacctccaatacctgatgctcttgttgttaatgttggtgatcttctacaggcaagttct 28783337  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 28738867 - 28738822
Alignment:
Q  18 aaccattggaattctcttttcccttgctcactacaaacaccattac 63  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  28738867 aaccattggaattctcttttcccttgctcactgcaaacaccattac 28738822  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 16414607 - 16414496
Alignment:
Q  135 gcttcttcaagaccattttggtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgat 234  Q
    |||||| ||||| ||| | ||||||||||||  |||||||| ||| | ||||||||||||||| || || ||| |||||||    ||||||||||| |||    
T  16414607 gcttctacaagatcatgtaggtggccttcaatatcttcacagggacatgtggattgatgtacctcctatgcctgaggctctaatcgttaatattggcgat 16414508  T
Q  235 gttctgcaggca 246  Q
     |||||||||||    
T  16414507 tttctgcaggca 16414496  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 16439266 - 16439346
Alignment:
Q  154 ggtggccttcaagttcttcacaaggaaaagtggattgatgtaccaccaataccttaggctcttgctgttaatattggtgat 234  Q
    ||||| || ||||||||||| || || | ||||||||||||||| ||  ||| | ||||||||| ||||||||| ||||||    
T  16439266 ggtggtctccaagttcttcataaagatatgtggattgatgtacctcctctacatgaggctcttgttgttaatatcggtgat 16439346  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 10768505 - 10768639
Alignment:
Q  58 cattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggtg 157  Q
    ||||| |||||| |||||||||||| ||| || ||  |||||||  |||| |||||||||| |  ||||||| |   |||||| ||||||||| ||||||    
T  10768505 cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtg 10768604  T
Q  158 gccttcaagttcttcacaaggaaaagtggattgat 192  Q
    |||| ||||||||| |  |||| || |||||||||    
T  10768605 gcctccaagttctttatcaggataaatggattgat 10768639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 2050771 - 2050885
Alignment:
Q  57 ccattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggt 156  Q
    |||||| |||||| |||||||||||| ||| || ||  | |||||  | || |||||||||| |  ||||||| |   |||||||||||||||| |||||    
T  2050771 ccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatattggt 2050870  T
Q  157 ggccttcaagttctt 171  Q
    ||||| |||||||||    
T  2050871 ggcctccaagttctt 2050885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 2055180 - 2055294
Alignment:
Q  57 ccattactatcctgcttgtcctgaactagatttaacgatgggaaccgccaaacattctgatagtagtttcctcgccaagcttcttcaagaccattttggt 156  Q
    ||||||||| ||| |||||||||||| ||| || ||  | |||||  | || |||||||||| |  ||||||| |   |||||||||||||||| |||||    
T  2055180 ccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatattggt 2055279  T
Q  157 ggccttcaagttctt 171  Q
    ||||| |||||||||    
T  2055280 ggcctccaagttctt 2055294  T

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