View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5755_low_2 (Length: 292)
Name: NF5755_low_2
Description: NF5755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5755_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 26616860 - 26617135
Alignment:
| Q |
1 |
tatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616860 |
tatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagca |
26616959 |
T |
|
| Q |
101 |
acaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacagattagggaagtgagaagaaagtttcgccactaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616960 |
acaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacagattagggaagtgagaagaaagtttcgccactaat |
26617059 |
T |
|
| Q |
201 |
gttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgtttctccaaagt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26617060 |
gttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgtttctccaaagt |
26617135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 26722788 - 26723063
Alignment:
| Q |
1 |
tatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722788 |
tatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagca |
26722887 |
T |
|
| Q |
101 |
acaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacagattagggaagtgagaagaaagtttcgccactaat |
200 |
Q |
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| T |
26722888 |
acaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatccacacagattagggaagtgagaagaaagtttcgccactaat |
26722987 |
T |
|
| Q |
201 |
gttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgtttctccaaagt |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722988 |
gttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttattttcttgtttctccaaagt |
26723063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 26861059 - 26861167
Alignment:
| Q |
49 |
agtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaac |
148 |
Q |
| |
|
|||| ||||||||||||||||||| || ||| |||||| ||||||||| ||| || |||||||||||||| ||||||||| | || ||||||||| | |
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| T |
26861059 |
agtataaatgaaaaagtttaagaagtctaattaataacgtgccacaaggaaaacgaaaataatggttctgcaatgattttcattaaagaaaaagttgatc |
26861158 |
T |
|
| Q |
149 |
aataattga |
157 |
Q |
| |
|
||||||||| |
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| T |
26861159 |
aataattga |
26861167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 26811169 - 26811221
Alignment:
| Q |
107 |
ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc |
159 |
Q |
| |
|
|||||||||||||| |||||||||| | || |||||||||||||||||||||| |
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|
| T |
26811169 |
ataatggttctgcaatgattttcactaaagaaaaagttgaacaataattgatc |
26811221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 26974603 - 26974663
Alignment:
| Q |
99 |
caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc |
159 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||| | || |||||||||||||||||||||| |
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|
| T |
26974603 |
caacaaaaataatggttctgcaatgagtttcacaaaagaaaaagttgaacaataattgatc |
26974663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 26848236 - 26848291
Alignment:
| Q |
103 |
aaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
158 |
Q |
| |
|
|||||||||||||||||| |||||||||| | || ||||||||| ||||||||||| |
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| T |
26848236 |
aaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat |
26848291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 26974753 - 26974804
Alignment:
| Q |
180 |
gaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactctta |
233 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||| ||||||||||||| |
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| T |
26974753 |
gaaggaagtttcgctactaatgttaaa--aatggacactcataaataactctta |
26974804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 26958791 - 26958848
Alignment:
| Q |
99 |
caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg |
156 |
Q |
| |
|
||||||| |||||||||||| | ||| |||||| | || ||||||||||||||||||| |
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|
| T |
26958791 |
caacaaaaataatggttctgtaatgagtttcacaaaagaaaaagttgaacaataattg |
26958848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 27667911 - 27667862
Alignment:
| Q |
107 |
ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg |
156 |
Q |
| |
|
||||||||||||||||| |||||| | || ||||||||||||||||||| |
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|
| T |
27667911 |
ataatggttctgcagtgtttttcagtaaagaaaaagttgaacaataattg |
27667862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 27310371 - 27310311
Alignment:
| Q |
98 |
gcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
158 |
Q |
| |
|
||||||| ||||||||||| || |||||||||| | || ||||||||||| ||||||||| |
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|
| T |
27310371 |
gcaacaagaataatggttcttcaatgattttcactaaagaaaaagttgaacgataattgat |
27310311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 17994315 - 17994256
Alignment:
| Q |
99 |
caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
158 |
Q |
| |
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||||||| |||||||||||||| ||||||||| | || ||||||||||||||||||||| |
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|
| T |
17994315 |
caacaaaaataatggttctgcaatgattttcagtaaagaaaaagttgaacaataattgat |
17994256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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