View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5756-Insertion-5 (Length: 183)
Name: NF5756-Insertion-5
Description: NF5756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5756-Insertion-5 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 30202989 - 30203164
Alignment:
| Q |
8 |
gtccactttggatatcactaaaatttagcagcatgttcagcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacg |
107 |
Q |
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| T |
30202989 |
gtccacttttgatatcactaaaatttagcaggatgttctgcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacg |
30203088 |
T |
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| Q |
108 |
ccatctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttgatggatgtccccttcttgaa |
183 |
Q |
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| T |
30203089 |
ccatctttcgatgtttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttcttgaa |
30203164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 30223843 - 30224016
Alignment:
| Q |
10 |
ccactttggatatcactaaaatttagcagcatgttcagcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacgcc |
109 |
Q |
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| T |
30223843 |
ccacttttgaaatcattaaaatttagcagaatgttcagtaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcctaagctacgtc |
30223942 |
T |
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| Q |
110 |
atctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttgatggatgtccccttcttgaa |
183 |
Q |
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| T |
30223943 |
atctttcgatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttcttgaa |
30224016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 30230839 - 30231012
Alignment:
| Q |
10 |
ccactttggatatcactaaaatttagcagcatgttcagcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacgcc |
109 |
Q |
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| T |
30230839 |
ccacttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagctgaatgatgacgcttttgctattgcaaaaaccatgactaagttacgcc |
30230938 |
T |
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| Q |
110 |
atctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttgatggatgtccccttcttgaa |
183 |
Q |
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| T |
30230939 |
atctttcgatgtttggaaacttgcttactaatgttgggttgcatgccattcttgatggttgcccccttcttgaa |
30231012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 30240123 - 30240229
Alignment:
| Q |
77 |
ttgctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttgatggatgtcccct |
176 |
Q |
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| T |
30240123 |
ttgctattgcaaacaccatgcctaagctacgccttcttatgatttttggaaactcactcactaatgttgggttgctttccattcttgatgcatgccctct |
30240222 |
T |
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| Q |
177 |
tcttgaa |
183 |
Q |
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| T |
30240223 |
tcttgaa |
30240229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 29649622 - 29649726
Alignment:
| Q |
65 |
atgatgacgcaattgctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttga |
164 |
Q |
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||||||| ||||||||| ||| |||||||||| ||||| |||| ||| || ||| | || ||| || |||||||||| || |||| |||||||||||| |
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| T |
29649622 |
atgatgaggcaattgctgttggaaaaaccatgactaagctacgacatattaagatttatgaaaatttgctcactaatgatggattgcttgccattcttga |
29649721 |
T |
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| Q |
165 |
tggat |
169 |
Q |
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||||| |
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| T |
29649722 |
tggat |
29649726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 30231478 - 30231554
Alignment:
| Q |
87 |
aaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttgatg |
166 |
Q |
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| T |
30231478 |
aaaaaacatgcctaagctacgtcatctt---atgattggaaactctctcactaatgttgggttgcttgccactcttgatg |
30231554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 16644095 - 16643995
Alignment:
| Q |
79 |
gctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttgatggatgtccccttc |
178 |
Q |
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| T |
16644095 |
gctattgcaaaaaccatgcctaagcttcgctatctttcaatgattggaaacacactcactaatgatgagttgcttgtcattcttgatcgatgccctcttc |
16643996 |
T |
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| Q |
179 |
t |
179 |
Q |
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| T |
16643995 |
t |
16643995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 17618456 - 17618356
Alignment:
| Q |
79 |
gctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttactcactaatgtcgggttgcatgccattcttgatggatgtccccttc |
178 |
Q |
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| T |
17618456 |
gctattgcaaaaaccatgcctaagcttcgctatctttcaatgattggaaacacactcactaatgatgagttgcttgtcattcttgatcgatgccctcttc |
17618357 |
T |
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| Q |
179 |
t |
179 |
Q |
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| T |
17618356 |
t |
17618356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 6046754 - 6046802
Alignment:
| Q |
65 |
atgatgacgcaattgctattgcaaaaaccatgcctaagttacgccatct |
113 |
Q |
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| T |
6046754 |
atgatgaggcattttctattgcaaaaaccatgcctgggttacgccatct |
6046802 |
T |
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