View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5756_high_4 (Length: 379)
Name: NF5756_high_4
Description: NF5756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5756_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 76 - 364
Target Start/End: Original strand, 10480085 - 10480372
Alignment:
| Q |
76 |
ccaatttatgatctgcaatattgtaatttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggt |
175 |
Q |
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|||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10480085 |
ccaaattatgatatgtaatattgtaatttcagctcaaagttttggactcccttatctaagtgcatatcttgattcattggggaccaatttttcacatggt |
10480184 |
T |
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| Q |
176 |
gcaaactttgcaacaacagcatcaacaattagacccccaccaagtattatacctcagggtggattcagtcctttctaccttgatgtccaatacactcaat |
275 |
Q |
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| T |
10480185 |
gcaaactttgcaacaacatcatcaacaattagacccccaccaagtattatacctcagggtggattcagtcctttctaccttgatgtccaatacactcaat |
10480284 |
T |
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| Q |
276 |
ttagagatttcaaacctagaacacaattcattagacaacaaggtacaagaaaaacttacattgatttaaatatttacacatacttttag |
364 |
Q |
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| T |
10480285 |
tcagagatttcaaacctagaacacaattcattagacaacaaggtacaagaaaaacttacattaattt-aatattcacacatacttttag |
10480372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 10546793 - 10546689
Alignment:
| Q |
100 |
aatttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggtgcaaactttgcaacaacagcatca |
199 |
Q |
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| T |
10546793 |
aatttcagctgatagttttggactcccatttctaagtgcatatcttgattctttgggggctaactactcacatggaggaaactttgcaacggcatcatca |
10546694 |
T |
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| Q |
200 |
acaat |
204 |
Q |
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||||| |
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| T |
10546693 |
acaat |
10546689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 10499455 - 10499558
Alignment:
| Q |
101 |
atttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggtgcaaactttgcaacaacagcatcaa |
200 |
Q |
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|||||||| ||||| |||||||| || ||||||||| |||||||| ||||| ||||| | ||||| ||||||||||||||||||||||| ||| |||| |
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| T |
10499455 |
atttcagcacaaagctttggacttccctatctaagtccatatcttaattctctggggtcaaatttcacacatggtgcaaactttgcaacagcagggtcaa |
10499554 |
T |
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| Q |
201 |
caat |
204 |
Q |
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|||| |
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| T |
10499555 |
caat |
10499558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 10502390 - 10502498
Alignment:
| Q |
96 |
ttgtaatttcagctcaaagttttggactcccttatctaagtgcatatcttgattctttggggaccaatttttcacatggtgcaaactttgcaacaacagc |
195 |
Q |
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||||||||||||| || || |||||||| || ||||||||| |||||||| ||||| | ||| | || || |||||||||||||||| |||||| || |
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| T |
10502390 |
ttgtaatttcagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcaacaggagg |
10502489 |
T |
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| Q |
196 |
atcaacaat |
204 |
Q |
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||||||||| |
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| T |
10502490 |
atcaacaat |
10502498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 10480012 - 10480050
Alignment:
| Q |
40 |
aatttaattctaattctaaataaaaggttttacattccaa |
79 |
Q |
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| T |
10480012 |
aatttaattctaattctaaataaaagg-tttacattccaa |
10480050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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