View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5756_low_1 (Length: 847)
Name: NF5756_low_1
Description: NF5756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5756_low_1 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 1 - 831
Target Start/End: Complemental strand, 27740 - 26912
Alignment:
| Q |
1 |
atttgtgccatgggatgtgtccacagt------gccaggcttactcatatgctcaggtccctgataagcagctgcgtggtcttattccttcaaactgttg |
94 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27740 |
atttgtgccatgggatgtgtccacagtcacagtgccaggcttactcatatgctcaagtccctgataagcagcagcgtggtcttattccttcaaactgttg |
27641 |
T |
|
| Q |
95 |
gatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagacataggtatg |
194 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27640 |
gatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagacataggtatg |
27541 |
T |
|
| Q |
195 |
catatgatgattaaattagagacatatttctctcttcnnnnnnnnnnatataaaattagaaacaaattcatgattctgaagattccttttattcattttt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27540 |
catatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaattccttttattcattttt |
27441 |
T |
|
| Q |
295 |
gtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacctcgcatacttcaact |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27440 |
gtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacctcgcatacttcaact |
27341 |
T |
|
| Q |
395 |
ttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcgtgttgatcaaagtagaagaaagtt |
494 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
27340 |
ttagatgcaataccacaacaggccaaggtcaccttagcttcacggccgctaacaacgttagttacagagttattcgtgttgatcaaagtagaagaaagct |
27241 |
T |
|
| Q |
495 |
tacccttcaaaatcaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgtttcgcatgaccagtgac |
594 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27240 |
tacccttcataatgaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgtttcgcatgaccagtgac |
27141 |
T |
|
| Q |
595 |
gatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctggaaacattctacctgta |
694 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
27140 |
aatacgtgctctgaacaacttgaagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctggaaccattctacttgta |
27041 |
T |
|
| Q |
695 |
gtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaatttgtaccaaaagtaagtattaatattctattattcatgtaac |
794 |
Q |
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| T |
27040 |
gtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaaattgtaccaaaagtaagtattaat--------attcatgtaac |
26949 |
T |
|
| Q |
795 |
taagaatattacaaattcacttaatttgatgaatttg |
831 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26948 |
taagaatattacaaattcacttaatttgatgaatttg |
26912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 271 - 743
Target Start/End: Complemental strand, 2307 - 1838
Alignment:
| Q |
271 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaact |
370 |
Q |
| |
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||||||||||||||||| || |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| || |
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| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagccttgtggtacaaacacagtcccttatcctctcaataccagacccatct |
2208 |
T |
|
| Q |
371 |
gtggagacctcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcg |
470 |
Q |
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||| |||| || |||||||||||||||||||||| | ||||| ||| | ||||||||||| ||| ||||||||||||||||| ||| ||| | |
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| T |
2207 |
gtgcagacttcacatacttcaactttagatgcaacatctcaacg------ggtaaacttagcttcaccgccaacaacaacgttagttacaaagttattag |
2114 |
T |
|
| Q |
471 |
tgttgatcaaagtagaagaaagtttacccttcaaaatcaggattattcctt--tacta-gttgtgatgaaggatctaaacggacaggaagtctgaacgtt |
567 |
Q |
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| T |
2113 |
tgtagacccaagttcaagaacatttaccatttataatgagcataattctttcaaacaatattgtgctgaaggatctaaatagaaaggcaatttgaaggtt |
2014 |
T |
|
| Q |
568 |
tctttaccgtttcgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgatt |
667 |
Q |
| |
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| | ||||||| | | ||| |||| || | |||||||||||| | | |||||||||||| ||||||||||||| | | ||| |||||| |||||||| |
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| T |
2013 |
ttctcaccgttttactttgccaatgacaatccatgctctgaacaagtggaagttagttgggatccaccttccgaactcgtttgtgataactttgttgatt |
1914 |
T |
|
| Q |
668 |
gccatggctggaaacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcga |
743 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||| |||||| |
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| T |
1913 |
tctatggttggaaacattctacctgtagtaaaggaaacaagtgtctttgcaatgcaaagtataaatggagtggcga |
1838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
82 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
181 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
|
| Q |
182 |
agacataggtatgcatatgatgattaaattaga |
214 |
Q |
| |
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||| ||||||||||| |||||||||||||||| |
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| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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