View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5756_low_2 (Length: 436)
Name: NF5756_low_2
Description: NF5756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5756_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 33304214 - 33304440
Alignment:
| Q |
14 |
atcatgtctcattagtaaaatatggacttgaatcctgttaaagtgtaattagatatttcacctttctctgcatttcactctcaaatctcataccgtttct |
113 |
Q |
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| T |
33304214 |
atcatgtctcaatagtaaaatatggacttgaatcctgttaaagtgtaattagatatttcacctttctctgcatttcactctcaaatctcataccgtttct |
33304313 |
T |
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| Q |
114 |
ttgtttaatcgcaattctcagcaattgcaaattttgtctctgattcttgatctgtgaatccttgttatccttttatgattcacattttctcatttatctc |
213 |
Q |
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| T |
33304314 |
ttgtttaatcgcaattctcagcaattgcaaattttgtctctgattcttgatctgtgaatccttgttatccttttatgattcacattttctcatttatctc |
33304413 |
T |
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| Q |
214 |
tttccttttctctgagttgcaattgca |
240 |
Q |
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| T |
33304414 |
tttccttttctctgagttgcaattgca |
33304440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 33304505 - 33304623
Alignment:
| Q |
305 |
tgtctgagagttctgcagaaagtgtcaatggcggatacaccaacactaagactaagggttatcagaatgataccctcagtccctatttcatgcatccaaa |
404 |
Q |
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| T |
33304505 |
tgtctgagagttctgcagaaagtgtcaatggcggatacaccaacactaagactaagggttatcagaatgataccctcagtccctatttcatgcatccaaa |
33304604 |
T |
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| Q |
405 |
tgagaatccaggtattgtt |
423 |
Q |
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| T |
33304605 |
tgagaatccaggtgttgtt |
33304623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 30869174 - 30869291
Alignment:
| Q |
305 |
tgtctgagagttctgcagaaagtgtcaatggcggatacaccaacactaagactaagggttatcagaatgataccctcagtccctatttcatgcatccaaa |
404 |
Q |
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| T |
30869174 |
tgtctgagagttctgcagagagtgtcaatggtggattcaccagcactaagaacaagggttatcaaaatgatacccttagtccctatttcatgcatcctaa |
30869273 |
T |
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| Q |
405 |
tgagaatccaggtattgt |
422 |
Q |
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| T |
30869274 |
cgagaatccaggtcttgt |
30869291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 30868996 - 30869068
Alignment:
| Q |
110 |
ttctttgtttaatcgcaattctcagcaattgcaaattttgtctc--tgattcttgatctgtgaatccttgtta |
180 |
Q |
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| T |
30868996 |
ttcttcgtttcattgcaactctcagcaattgcaatttttttctctctgattcttgatttgtgaattcttgtta |
30869068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 400
Target Start/End: Original strand, 20082289 - 20082379
Alignment:
| Q |
310 |
gagagttctgcagaaagtgtcaatggcggatacaccaacactaagactaagggttatcagaatgataccctcagtccctatttcatgcatc |
400 |
Q |
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| T |
20082289 |
gagagttctccaaagagtgttaatggtggattcacaaacaccaagaacaagggttatcataatgatattcttagtccatatttcatgcatc |
20082379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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