View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5756_low_3 (Length: 381)
Name: NF5756_low_3
Description: NF5756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5756_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 81 - 363
Target Start/End: Complemental strand, 19504892 - 19504610
Alignment:
| Q |
81 |
cttacttttgtcactcgtcttcacccaaaaaccctgtttgcaccttaaaataattatcatgttgggcaaattcggtaaataggtgattaaactattaagc |
180 |
Q |
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| T |
19504892 |
cttacttttgtcactcgtcttcacccaaaaaccctgtttacaccttaaaataattatcatgttgggcaaattaggtaaataggtgattaaactattaggc |
19504793 |
T |
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| Q |
181 |
taggacgcccctcagtcgagtgaaggatatgaaatgttagaggaattgggagagggaaccgattttttctcaaggaaactaactaagaatgtgggtcata |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
19504792 |
gaggacgcccctcagtcgagtgaaggatatgaaatgttagagaaattgggagagtgaacggattttttctcaagaaaactaactaagaatgtgggtcata |
19504693 |
T |
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| Q |
281 |
aaaggctcagagctgagtcaaagcatagtgagactacatgatgatgcgacaaatccacgatctctactctcaacaacactaac |
363 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| ||| | ||| |||||||||||||||||||||||||||| ||||| |
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| T |
19504692 |
aaaggctcagaggtgagtcaaagcatagtgggactacacgattacgcggcaaatccacgatctctactctcaacaactctaac |
19504610 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 18390875 - 18390940
Alignment:
| Q |
298 |
tcaaagcatagtgagactacatgatgatgcgacaaatccacgatctctactctcaacaacactaac |
363 |
Q |
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|||||||||||| |||||| || ||||||||||||| |||| ||||||||| |||||| ||||||| |
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| T |
18390875 |
tcaaagcatagtaagactagataatgatgcgacaaacccacaatctctactttcaacaccactaac |
18390940 |
T |
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