View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5756_low_5 (Length: 320)
Name: NF5756_low_5
Description: NF5756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5756_low_5 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 64 - 320
Target Start/End: Original strand, 17254044 - 17254296
Alignment:
| Q |
64 |
tagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttagtgacttgagcattctttaacttgtt |
163 |
Q |
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| T |
17254044 |
tagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttagttactttagaattctttaacttgtt |
17254143 |
T |
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| Q |
164 |
tctataatcttcatcgcttatatttttggtaggtctagaacaacagcttcccatatcgtaaaattttatatcacacaaaaagattgtactatgtatgtcc |
263 |
Q |
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| T |
17254144 |
tctataatcttcatcgcttatatttttggtaggtctagaacaacagcttcccatatcgtaaaattttatatcacacaaaaagattgtactatgta----c |
17254239 |
T |
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| Q |
264 |
tgatgcacaaaggtagctcttgtatttataagagagaatgtaacaaacctaagataa |
320 |
Q |
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| T |
17254240 |
tgatgcataaaggtaggtcttgtatttataagagagaatataacaaacctaagataa |
17254296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 17247140 - 17247188
Alignment:
| Q |
64 |
tagaagtactcataataaccatgttattatccttgagagcactagaact |
112 |
Q |
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| T |
17247140 |
tagaagtagtcatagtaaccatgttataatacttgagagcactagaact |
17247188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 17247197 - 17247237
Alignment:
| Q |
109 |
aacttcttgtgacttgtcgcctagttttagtgacttgagca |
149 |
Q |
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| T |
17247197 |
aacttcttctgacttgtcctctagttttagtgacttgagca |
17247237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 17258988 - 17259060
Alignment:
| Q |
160 |
tgtttctataatcttcatcgcttatatttttggtaggtctagaacaacagcttcccatatcgtaaaattttat |
232 |
Q |
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| T |
17258988 |
tgtttctataatcttcatcgtttactttttctctagggttggaaaaacaacttcccatatcgtaaaattttat |
17259060 |
T |
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