View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5756_low_6 (Length: 235)
Name: NF5756_low_6
Description: NF5756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5756_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45038998 - 45039219
Alignment:
| Q |
1 |
tcctattgccacaactgacctagtaaacaactcatccatcaatgtgtcacaatatgctgaagaaatgccaaccaactcattatcaataccaagaactgaa |
100 |
Q |
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| T |
45038998 |
tcctattgccacaactgacctagtaaacaactcatccatcaatgtgtcacaacatgctgaagaaatgccaaccaactcattatcaataccaacaactgaa |
45039097 |
T |
|
| Q |
101 |
caacatcatgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039098 |
caacatcatgattctttgcctttgtcatcatcaacagctaaccaagggtcgaattcgaagaagcctcgaaacacttcggatacactagatcacataatgt |
45039197 |
T |
|
| Q |
201 |
cagagaggaataggagacaact |
222 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
45039198 |
cagagagaaataggagacaact |
45039219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 45064626 - 45064857
Alignment:
| Q |
2 |
cctattgccacaactgacctagtaaacaactcatccatcaatgtgtcacaat---------atgctgaagaaatgccaaccaactcattatcaataccaa |
92 |
Q |
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|||||||||||| ||| |||||| ||||||||||| |||| ||||||||| | ||||| |||||| || ||||| |||| |||||||||||| |
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| T |
45064626 |
cctattgccacagctggcctagtcaacaactcatcgatcattgtgtcacattcaactcaacatgctaaagaaaagctaaccagctcagtatcaataccaa |
45064725 |
T |
|
| Q |
93 |
gaactgaacaacatcatgattctttgcctttgtcatcatcaacag--ctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagat |
190 |
Q |
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| T |
45064726 |
caactgctcaacatcaagattatttgcctttgtcatcatcagcgcgactaaacaagggtcaaattcgaagaagcctcgaagcgcttatgagacagtaggt |
45064825 |
T |
|
| Q |
191 |
cacataatgtcagagaggaataggagacaact |
222 |
Q |
| |
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| T |
45064826 |
cacataatgtcagagaggaatatgagacaact |
45064857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 45083521 - 45083397
Alignment:
| Q |
94 |
aactgaacaacatcatgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcac |
193 |
Q |
| |
|
||||||| | || |||||||||||||||||||||||||||| ||| | || ||||| ||||| | |||| |||||| | |||| || || ||||||||| |
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| T |
45083521 |
aactgaatagcaccatgattctttgcctttgtcatcatcaaaggctgaccacgggtcgaattcaaggaagactcgaagcgcttctgagacgctagatcac |
45083422 |
T |
|
| Q |
194 |
ataatgtcagagaggaataggagac |
218 |
Q |
| |
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||||| |||||||||| ||||||| |
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| T |
45083421 |
ataataacagagaggaacaggagac |
45083397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 29375781 - 29375906
Alignment:
| Q |
94 |
aactgaacaacatcatgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcac |
193 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| |||| |||||||| ||||| ||||||||| ||| | |||| || |||||||||||| |
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|
| T |
29375781 |
aactgaacaacaccatgattctttgcctttgtcgtcatcaatggctagccaagggtcgaattcaaagaagcctagaagcgcttctgagacactagatcac |
29375880 |
T |
|
| Q |
194 |
ataatgtcagagaggaataggagaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
29375881 |
ataatgtcagagaggaataggagaca |
29375906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 29375635 - 29375684
Alignment:
| Q |
2 |
cctattgccacaactgacctagtaaacaactcatccatcaatgtgtcaca |
51 |
Q |
| |
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|||||||||||||| | |||| | ||||||||||||| |||||||||||| |
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| T |
29375635 |
cctattgccacaacgggcctattcaacaactcatccaccaatgtgtcaca |
29375684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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