View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757-Insertion-10 (Length: 321)
Name: NF5757-Insertion-10
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 29354153 - 29353974
Alignment:
| Q |
8 |
tcaacaacaccttcaattcttgataactcctcaacattcatttccttaagcaacaaaacagcattttgtcttgcacctaaatctttaccatttaaaaacc |
107 |
Q |
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| T |
29354153 |
tcaacaacaccttcaattcttgataactcctcaacattcatttctttaagcaacaaaacagcattttgtcttgcacctaaatctttgccatctaaaaacc |
29354054 |
T |
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| Q |
108 |
aaaccaaacaattcaaagacgaagacgataaacacatcttcgttttcgaatcaccaaaagaagttttaaaaatccatgtt |
187 |
Q |
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| T |
29354053 |
aaaccaaacaattcaaagacgaagacgataaacacatcttcgttttcgaatcaccaaaagaagttttaacaatccatgtt |
29353974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 29353889 - 29353840
Alignment:
| Q |
272 |
gaagaaactccatttccaattataaccctcttattcctctcactctctct |
321 |
Q |
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| T |
29353889 |
gaagaaactccatttccaattataaccctcttattcctctcactctctct |
29353840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 33089662 - 33089624
Alignment:
| Q |
37 |
ctcaacattcatttccttaagcaacaaaacagcattttg |
75 |
Q |
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| T |
33089662 |
ctcaacattcatttccttaagcaacaaagaagcattttg |
33089624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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