View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5757-Insertion-3 (Length: 495)
Name: NF5757-Insertion-3
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 104 - 469
Target Start/End: Original strand, 16041311 - 16041679
Alignment:
| Q |
104 |
aacaaatgactagtttgtacattaaacacccacactactagtaaggtattttttcaactgactatgcacatatttatctctgttagtcgttgtatttcac |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16041311 |
aacaaatgactagtttgtacattaaacacccacactactagtaagatacttttttaaccgactatgcacatatttatctctgttagtcgttgtatttcac |
16041410 |
T |
|
| Q |
204 |
atatgcattaatttgttgaccagaaacgtcacaactttttctttcaccgatcccaaaaatgtagtttcaacatattcaaaaatttaggaaactcgtcaca |
303 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16041411 |
atatgcattaatttgttgacccaaaacgtcacaactttttctttcaccgatcccaaaattgtagcttcaacatattcaaaaatttaggaaactcgtcaca |
16041510 |
T |
|
| Q |
304 |
tacaattctgaatcagttgcaattatcaatatacgcttgctctgtatctgaattcacaatagtatctgaaacatccattaccgtcttcaacacttctctt |
403 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |
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| T |
16041511 |
tacaattctgaattagttgcaattatcaatatacgcttgctctgtatctgaattcacaatagtatctgaaacatccatcactgtcttcaacactactctt |
16041610 |
T |
|
| Q |
404 |
gatt--atctctttccaatcctg-cctttgagatccctaagtttgcaatctattttacattttactcca |
469 |
Q |
| |
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|||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
16041611 |
gatttgatctctttccaatcccgccctttgagatacctaagtttgcaatctattttacattttgctcca |
16041679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 16045794 - 16045689
Alignment:
| Q |
9 |
taagcagctaaactagtccccccaagttcgaaatatgtaattaatttgatcaaataagtatactttaaggactttaagtgtaactctcatccctaaacaa |
108 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16045794 |
taagcagctaaactagtccccctaagttcaaaatatgtaattaatttgatcaaataaatatactttaagga-tttaagtgtaactctcatccctaaacaa |
16045696 |
T |
|
| Q |
109 |
atgacta |
115 |
Q |
| |
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| ||||| |
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|
| T |
16045695 |
aggacta |
16045689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 26264276 - 26264218
Alignment:
| Q |
302 |
catacaattctgaatcagttgcaattatcaatatacgcttgctctgtatctgaattcac |
360 |
Q |
| |
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||||||| | ||||| |||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
26264276 |
catacaactttgaattggttgcaattatcaacatatgcttgctctgtatcggaattcac |
26264218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 360
Target Start/End: Complemental strand, 10925670 - 10925577
Alignment:
| Q |
268 |
tttcaacatattc-aaaaatttaggaaactcgtcacatacaattctgaatcagttgcaattatcaatatacgcttgctctgtatctgaattcac |
360 |
Q |
| |
|
||||||||||||| ||||| |||||||| | || ||||||| | ||||| |||||||||||||| ||| | ||||| |||||| |||||||| |
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|
| T |
10925670 |
tttcaacatattccaaaaacttaggaaatttgttgcatacaactttgaataggttgcaattatcaacatatggttgctatgtatcggaattcac |
10925577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 463
Target Start/End: Original strand, 31049092 - 31049332
Alignment:
| Q |
227 |
aaacgtcacaactttttctttcaccgatcccaaaaatgtagtttcaacatatt-caaaaatttaggaaactcgtcacatacaattctgaatcagttgcaa |
325 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||| | || |||||||||||| || ||| |||||||| | || ||||||| | |||| | ||||||| |
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|
| T |
31049092 |
aaacgtcacaacttattccttcaccgaacccaaaattttattttcaacatatttcacaaacttaggaaatttgtggcatacaactttgaaccggttgcaa |
31049191 |
T |
|
| Q |
326 |
ttatcaatatacgcttgctctgtatctgaattcacaatagtatctgaaacatccattaccgtcttcaacacttctcttga--ttatctctttccaatcc- |
422 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| ||| || | || |||| |||||||||| ||| || ||||| | |||||||||| |||| |
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|
| T |
31049192 |
ttatcaacatatgcttgctctgtatcagaattcacgatatcctcccatgcaaccataaccgtcttcaccacctcacttgacttgatctctttcctatcct |
31049291 |
T |
|
| Q |
423 |
tgcctttgagatccctaagtttgcaatctattttacatttt |
463 |
Q |
| |
|
||||||| | |||| ||| |||||||||| | ||||||||| |
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|
| T |
31049292 |
tgccttttaaatccttaactttgcaatctgtcttacatttt |
31049332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 142 - 359
Target Start/End: Original strand, 31059694 - 31059913
Alignment:
| Q |
142 |
tagtaaggtattttttcaactgactatgcacatatttatctctgttagtcgttgtatttcacatatgcattaatttgttgaccagaaacgtcacaacttt |
241 |
Q |
| |
|
||||||| || ||||||||| | ||||| |||||| ||||||| || || ||||| | ||||||| | | ||| |||| | |||| ||||||||| |
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|
| T |
31059694 |
tagtaagatactttttcaaccgtctatgtgcatattctgctctgtttgttgtagtattccccatatgcttgactttattgaaccaaaacttcacaactta |
31059793 |
T |
|
| Q |
242 |
ttctttcaccgatcccaaaaatgtagttt-caacatattcaaaa-atttaggaaactcgtcacatacaattctgaatcagttgcaattatcaatatacgc |
339 |
Q |
| |
|
||| |||||||| ||||||| |||| ||| |||||||||||||| |||||||||| | || ||||||| | |||| | ||| |||||||||| ||| | |
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|
| T |
31059794 |
ttccttcaccgaacccaaaattgtatttttcaacatattcaaaaaatttaggaaatttgtggcatacaactttgaaccggttacaattatcaacatatgt |
31059893 |
T |
|
| Q |
340 |
ttgctctgtatctgaattca |
359 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
31059894 |
ttgctctgtatcagaattca |
31059913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 360
Target Start/End: Original strand, 31044456 - 31044571
Alignment:
| Q |
246 |
ttcaccgatcccaaaaatgtagtttcaacatatt-caaaaatttaggaaactcgtcacatacaattctgaatcagttgcaattatcaatatacgcttgct |
344 |
Q |
| |
|
|||||||| ||||||| | || |||||||||||| |||||| |||||||| | || ||||||| | |||| | |||||||||||||| ||| ||||||| |
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|
| T |
31044456 |
ttcaccgaacccaaaattatattttcaacatatttcaaaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgct |
31044555 |
T |
|
| Q |
345 |
ctgtatctgaattcac |
360 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
31044556 |
ctgtatcaaaattcac |
31044571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 364
Target Start/End: Original strand, 13425566 - 13425725
Alignment:
| Q |
206 |
atgcattaatttgttgaccagaaacgtcacaactttttctttcaccgatcccaaaaatgtagtttcaacatattc-aaaaatttaggaaactcgtcacat |
304 |
Q |
| |
|
|||||| | ||| |||||| |||| |||||| ||| || ||||||| |||||| ||||||||||||||||||| ||||| ||||||| || | ||| |
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|
| T |
13425566 |
atgcataactttattgacctaaaacttcacaaatttctccttcaccggacccaaatatgtagtttcaacatattccaaaaacttaggaagcttttagcat |
13425665 |
T |
|
| Q |
305 |
acaattctgaatcagttgcaattatcaatatacgcttgctctgtatctgaattcacaata |
364 |
Q |
| |
|
|||| | |||||| |||||||||||||||||| ||||| ||| |||| |||||| ||||| |
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|
| T |
13425666 |
acaactttgaatcggttgcaattatcaatatatgcttggtctatatcagaattcccaata |
13425725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 364
Target Start/End: Original strand, 25370172 - 25370294
Alignment:
| Q |
243 |
tctttcaccgatcccaaaaatgtagtttcaacatattc-aaaaatttaggaaactcgtcacatacaattctgaatcagttgcaattatcaatatacgctt |
341 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||| || |||||| ||| ||| | | |
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|
| T |
25370172 |
tctttcaccggccccaaaattgtagtttcaacatattccaaaaatttaggaaacttgtcgcatacaattttgaatcgattccaattagcaacatatgtct |
25370271 |
T |
|
| Q |
342 |
gctctgtatctgaattcacaata |
364 |
Q |
| |
|
||| |||||| || ||||||||| |
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|
| T |
25370272 |
gctttgtatcagagttcacaata |
25370294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 25011173 - 25011277
Alignment:
| Q |
263 |
tgtagtttcaacatattc-aaaaatttaggaaactcgtcacatacaattctgaatcagttgcaattatcaatatacgcttgctctgtatctgaattcaca |
361 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| ||| |||||| | |||| | |||||||||||||||||| ||||||||| |||| ||||||| | |
|
|
| T |
25011173 |
tgtagtttcaacatattccaaaaacataggaaacttgtcgcatacagctttgaaccggttgcaattatcaatatatgcttgctctatatcggaattcata |
25011272 |
T |
|
| Q |
362 |
atagt |
366 |
Q |
| |
|
||||| |
|
|
| T |
25011273 |
atagt |
25011277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 392
Target Start/End: Original strand, 21883418 - 21883557
Alignment:
| Q |
254 |
tcccaaaaatgtagtttcaacata-ttcaaaaatttaggaaactcgtcacatacaattctgaatcagttgcaattatcaatatacgcttgctctgtatct |
352 |
Q |
| |
|
|||||||| | ||||||||||||| ||| |||| ||||||||| ||| ||||||||| |||||| ||| ||||||||| |||| | |||||| |||| |
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|
| T |
21883418 |
tcccaaaattatagtttcaacatatttcgaaaacataggaaacttgtcgcatacaattttgaatccattgtaattatcaagatacacctgctctatatca |
21883517 |
T |
|
| Q |
353 |
gaattcacaatagtatctgaaacatccattaccgtcttca |
392 |
Q |
| |
|
||||||| ||||| ||| || ||||||| ||||| |||| |
|
|
| T |
21883518 |
gaattcataatagcatcacaagcatccatgaccgtattca |
21883557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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