View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757-Insertion-4 (Length: 492)
Name: NF5757-Insertion-4
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 110 - 489
Target Start/End: Complemental strand, 6173075 - 6172696
Alignment:
| Q |
110 |
gctaggataccgacaaataagaaaatgtgagatggaaatagttagaatatagagagagaacaaacctaccatttgtggattccatctctaaaactttcnn |
209 |
Q |
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| T |
6173075 |
gctaggataccgacaaataagaaaatgtgagatggaaatagttagaatatagagagagaacaaacctaccatttgtggattccatctctaaaactttttt |
6172976 |
T |
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| Q |
210 |
nnnnnnaggaaccatctttacggttgtctagctgatgcccaattacagcaacacccataatgttatgcctagttgatttgattccatctccaaatcataa |
309 |
Q |
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| T |
6172975 |
ttttttaggaaccatctttacggtcgtctagctgatgcccaattacagcaacacccataatgttatgcctagttgatttgattccatctccaaatcataa |
6172876 |
T |
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| Q |
310 |
tcaaacaaagactccaacagagtaccctggtttttatgctagattagtcaaatcaattaatcagacacaaagaccatagactctgtgtcgaacccaattt |
409 |
Q |
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| T |
6172875 |
tcaaacaaagactcgaacagagtaccctggtttttatgctagattagtcaaatcaattaatcagacacaaagaccacatactctgtgtcgagcccaattt |
6172776 |
T |
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| Q |
410 |
gattgggttggaggaaattgatataatttgcatctctaatcaagtttttctcttaacgcacacactaaatcttgaacaag |
489 |
Q |
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| T |
6172775 |
gattaggttggaggaaattgatataatttgcatctctaatcaagtttttctcttaacgcacgcactaaatcttgaacaag |
6172696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 460
Target Start/End: Complemental strand, 6176576 - 6176466
Alignment:
| Q |
351 |
gattagtcaaatcaattaatcagacacaaagaccatagactctgtgtcgaacccaatttgattgggttggaggaaattgatataatttgcatctctaat- |
449 |
Q |
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| T |
6176576 |
gattagtcaaatcaattaatcaaacataaaaaccacaaactctctatcaaacccaatttgattaggtcggaggaaattgatataagtggcatctctaatg |
6176477 |
T |
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| Q |
450 |
caagtttttct |
460 |
Q |
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| T |
6176476 |
caagtttttct |
6176466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 6177019 - 6176986
Alignment:
| Q |
161 |
gagagagaacaaacctaccatttgtggattccat |
194 |
Q |
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| T |
6177019 |
gagagagaacaaacttaccatttgtggattccat |
6176986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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