View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757-Insertion-8 (Length: 360)
Name: NF5757-Insertion-8
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 45679386 - 45679732
Alignment:
| Q |
8 |
gttggtggcactcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacgttaagctttgaataatcatataaatgaatttgacaccac |
107 |
Q |
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| T |
45679386 |
gttggtggccctcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacattaagctttgaataatcatataaatgaatttgacaccac |
45679485 |
T |
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| Q |
108 |
attataacccaaaactttgaggtattaagtttataggtcctctcacttataaagtatccaacatccatctttccatccaatgtagccttttactcacact |
207 |
Q |
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| T |
45679486 |
attataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccattttttcatccaatgtagacttttactcacact |
45679585 |
T |
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| Q |
208 |
taatatcaacatgtatttatggacaacattaaactgtgttttttatgtctaaatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacgg |
307 |
Q |
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| T |
45679586 |
tgatatcaacatgtatttatggacaacattaaactgtgttttttatgtctaaatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacgg |
45679685 |
T |
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| Q |
308 |
tctaattaaatcgtttgtaaggtttggctcaccatccagaggaggta |
354 |
Q |
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| T |
45679686 |
tctaattaaatcgtttgtaaggtttggctcaccacccataggaggta |
45679732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 34675595 - 34675641
Alignment:
| Q |
112 |
taacccaaaactttgaggtattaagtttataggtcctctcacttata |
158 |
Q |
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| T |
34675595 |
taacccaaaactttgatgcattaaatttacaggtcctctcacttata |
34675641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 40991866 - 40991804
Alignment:
| Q |
100 |
gacaccacattataacccaaaactttgaggtattaagtttataggtcctctcacttataaagt |
162 |
Q |
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| T |
40991866 |
gacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagt |
40991804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 25991513 - 25991456
Alignment:
| Q |
103 |
accacattataacccaaaactttgaggtattaagtttataggtcctctcacttataaa |
160 |
Q |
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| T |
25991513 |
accacactttaacccaaaaccttaaggcattaggtttataggttctctcacttataaa |
25991456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 3384325 - 3384373
Alignment:
| Q |
114 |
acccaaaactttgaggtattaagtttataggtcctctcacttataaagt |
162 |
Q |
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| T |
3384325 |
acccaaaactttaaggcattaagtttatgggtcctcttccttataaagt |
3384373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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