View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757-Insertion-9 (Length: 359)
Name: NF5757-Insertion-9
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 27145882 - 27145701
Alignment:
| Q |
9 |
ggttgacttatttagcatcatgtttgacaaacaatcttattgtagagaaaaaattgcattgtaatagactgcattataattaataagtgagatttgctta |
108 |
Q |
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| T |
27145882 |
ggttgacttatttagcatcatgtttgacaaacaatcttattgtagagaaaaaattgcattgtaatagactgcattataattaataagtgagatttgctta |
27145783 |
T |
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| Q |
109 |
aatggaatttaataacttttttgaaggtcttagattggagagatgttttttgttaaatgagaacattaaataaattgtataa |
190 |
Q |
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| T |
27145782 |
aatgggatttaataacttttttgaaggtcttagattggagagatgttttttgttaaatgagaacattaaataaattgtataa |
27145701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 188 - 359
Target Start/End: Complemental strand, 27145677 - 27145506
Alignment:
| Q |
188 |
taaggcttaagcaacaaaaaataggagctctatcgcagatgatcttagcatttttaatatttaattagttgagttagttaacctttgtttatgtttgaga |
287 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27145677 |
taaggcttaagcacccaaaaataggagctctatcgcagatgatcttagcatttttaatatttaattagttgagttagttaacctttgcttatgtttgaga |
27145578 |
T |
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| Q |
288 |
ccatcaaatatgattttttgttgtttatatttgagattagagagaataagtatctaaattatgattcagtca |
359 |
Q |
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| T |
27145577 |
ccatcaaatatgattttttgttgtttatatttgagattagagagaataagtatctaaattatgattcagtca |
27145506 |
T |
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