View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5757_high_1 (Length: 494)
Name: NF5757_high_1
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 32162857 - 32163334
Alignment:
| Q |
1 |
acagcgtctcaattacgtgatattgttcttactacaaagcttcattgtaacattctcaaagcaaatgctgctgatagttttgttttgactagtttagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32162857 |
acagcgtctcaattacgtgatattgttcttactacaaagcttcactgtaacattctcaaatcaaatgctgctgatagttttgttttgactagtttagttg |
32162956 |
T |
|
| Q |
101 |
atgcttattcgaaatgtgggaaactaagggatgcacgaaaggtgtttgatgaaatacctgatagaagtgtggtgtcatggacttcgatgattgttgctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32162957 |
atgcttattcgaaatgtgggaaactaagggatgcacgaaaggtgtttgatgaaatacctgatagaagtgtggtgtcgtggacttcgatgattgttgctta |
32163056 |
T |
|
| Q |
201 |
tgttcaaaatgaatgtgctgaggaagggttgatgttgtttaatagaatgagggaagggtttgttgatgggaatgtgtttactgttgggagtttggttacg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32163057 |
tgttcaaaatgaatgtgctgaggaagggttgatgttgtttaatagaatgagggaagggtttcttgatgggaatgtgtttactgttgggagtttggttacg |
32163156 |
T |
|
| Q |
301 |
gcgtgtactaaattagggtgtttgcatcaagggaaatgggttcatgggtatgttattaagaatgggattgagattaattcttatttggctacttctcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32163157 |
gcgtgtactaaattagggtgtttgcatcaagggaaatgggttcatgggtatgttattaagaatgggattgagattaattcttatttggctacttctcttt |
32163256 |
T |
|
| Q |
401 |
tgaatatgtatgttaaatgtggtgatattggtgatgctcgttccgtgtttgatgaattttcagtttcgacttgtggtg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32163257 |
tgaatatgtatgttaaatgtggtgatattggtgatgctcgttccgtgtttgatgaattttcagtttcgacttgtggtg |
32163334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 42761122 - 42761176
Alignment:
| Q |
404 |
atatgtatgttaaatgtggtgatattggtgatgctcgttccgtgtttgatgaatt |
458 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
42761122 |
atatgtatggtaaatgcggtgagattggtgatgctcgtaaggtgtttgatgaatt |
42761176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University