View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_high_15 (Length: 248)
Name: NF5757_high_15
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 24167104 - 24167333
Alignment:
| Q |
2 |
ataggtacatatataagnnnnnnnncgaatgcagcaacatatattatgtgaaatatactataaatataatgcatgtgtatataataccattgtgtaggtc |
101 |
Q |
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| T |
24167104 |
ataggtacatatataagaataaaaacgaatgcagcaacgtatattatgtgaaatatactataaatataatgcatgtgtatataataccattgtgtaggtc |
24167203 |
T |
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| Q |
102 |
ttccctgaaccggtctgcccatatgcaaagacacatacattataaccatctaaaacagacctgatcaatggttgagtgtcggcataaatttgttctgcag |
201 |
Q |
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| T |
24167204 |
ttccctgaaccggtctgcccatatgcaaagacacatacattataaccatctaaaacagacctgatcaatggttgagtgtcggcataaatttgttctgcag |
24167303 |
T |
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| Q |
202 |
atgacaaagaagaaaacatcataaagagct |
231 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24167304 |
atgacaaagaagaaaacatcataaagagct |
24167333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 42235287 - 42235399
Alignment:
| Q |
86 |
taccattgtgtaggtcttccctgaaccggtctgcccatatgcaaagacacatacattataaccatctaaaacagacctgatcaatggttgagtgtcggca |
185 |
Q |
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||||||||||||||| |||||||| || || || ||||||||||||| ||| ||||||||||||||||||| || |||| |||||| |||| || || |
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| T |
42235287 |
taccattgtgtaggttttccctgagccagtttgtccatatgcaaagatgcatgcattataaccatctaaaaccgatctgaccaatggccgagtatcaaca |
42235386 |
T |
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| Q |
186 |
taaatttgttctg |
198 |
Q |
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| T |
42235387 |
tatatttgttctg |
42235399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 31647605 - 31647671
Alignment:
| Q |
85 |
ataccattgtgtaggtcttccctgaaccggtctgcccatatgcaaagacacatacattataaccatc |
151 |
Q |
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| T |
31647605 |
ataccattgtgtaagtttttcctgaacctgtctgaccataagcaaatatacaaacattataaccatc |
31647671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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