View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_high_2 (Length: 448)
Name: NF5757_high_2
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 43437330 - 43437752
Alignment:
| Q |
9 |
gaagaatataaccaagcatctcaaatcacaatcgtacaactaaagaaagaaaaacagctacataagaaatgaaaatgagcatagtaagaaggagtagaaa |
108 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43437330 |
gaagaatataaccaagcatctcaaattacaatcatacaactaaagaaagaaaaacagctacataagaaatgaaaatgagcatagtaagaaggggtagaaa |
43437429 |
T |
|
| Q |
109 |
aatacgaaattgattaacatcagacgaatttggaagaatcttgacgtgcttccccccactaactacgggtgatggcgttgagagcctctcatgggaggct |
208 |
Q |
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| T |
43437430 |
aatacgaaattgattaacatcagacgaatttggaagaatcttgacgtgcttccccccaccaactacgggtgatggcgttgagagcctctcatgggaggct |
43437529 |
T |
|
| Q |
209 |
gcaggacactctccagacacctgaaatggaaaacaggccaaatttcattcagaggccagaagttgaaggagaaagactgtcatttaggcaactaattgaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437530 |
gcaggacactctccagacacctgaaatggaaaacaggccaaatttcattcagaggccagaagttgaaggagaaagactgtcatttaggcaactaattgaa |
43437629 |
T |
|
| Q |
309 |
tgacctcttgtccatttgtcggtcgtagaatgtgattgtgagaaatttccttatcataatcaaagtcaagagcaacttcatcaccatctccatcaactgc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437630 |
tgacctcttgtccatttgtcggtcgtagaatgtgattgtgagaaacttccttatcataatcaaagtcaagagcaacttcatcaccatctccatcaactgc |
43437729 |
T |
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| Q |
409 |
aggacttcctggaatcaataagt |
431 |
Q |
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| T |
43437730 |
aggacttcctggaatcaataagt |
43437752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 368
Target Start/End: Original strand, 13827717 - 13828076
Alignment:
| Q |
10 |
aagaatataaccaagcatctcaaatcacaatcgtacaactaaagaaagaaaaacagcta-cataagaaatgaaaatgagcatagtaagaaggagtagaaa |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
13827717 |
aagaatataaccaaacatctcaaatcacaatcatacagctaaagaaagaaaaacagctatcataagaaatgaaaatgagcatagtaagaaggggtagaaa |
13827816 |
T |
|
| Q |
109 |
aatacgaaattgattaacatcagacgaatttggaagaatcttgacgtgcttccccccactaactacgggtgatggcgttgagagcctctcatgggaggct |
208 |
Q |
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|||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||||| | |||||||||||| | |||||||||||||| ||||| || |
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| T |
13827817 |
gatacgagattgattaacatcagacgaatatggaagactatggacacgcttccccccaccagctacgggtgatgacattgagagcctctcaggggagcct |
13827916 |
T |
|
| Q |
209 |
gcaggacactctccagacacctgaaatggaaaacaggccaaatttcattcagaggccagaagttgaaggagaaagactgtcatttaggcaactaattgaa |
308 |
Q |
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| T |
13827917 |
gcagaaaattctccagacacctgaaattgaaaacatgccaaatttcattcagaggcccgtagttgaaggagaaagactgtcatttaggaaactaattgaa |
13828016 |
T |
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| Q |
309 |
tgacctcttgtccatttgtcggtcgtagaatgtgattgtgagaaatttccttatcataat |
368 |
Q |
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|||||||||||||| ||||| ||| |||||||||||||||||| ||||||||| |||| |
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|
| T |
13828017 |
tgacctcttgtccacttgtcagtctaggaatgtgattgtgagaaacttccttatcgtaat |
13828076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 9476257 - 9476225
Alignment:
| Q |
336 |
gaatgtgattgtgagaaatttccttatcataat |
368 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
9476257 |
gaatgtgattgtgagaaacttccttatcataat |
9476225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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