View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5757_high_4 (Length: 362)
Name: NF5757_high_4
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 37001856 - 37002113
Alignment:
| Q |
17 |
gaatttacgggaaatattagggttggtgtttatcaagatgtttctgaacctcaacatgctaaggtaccactatgacactacctactttcttagatttctt |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37001856 |
gaatttacgggaaatatcagggttggtgtttatcaagatgtttctgaacctcaacatgctaaggtaccactatgacactacctactttcttagatttctt |
37001955 |
T |
|
| Q |
117 |
ctgatcatgaaatttcattttgtcaattttgtttcttaattatcaagtttctaactcagaggtgtcataatttgataacaataaactattctactacatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37001956 |
ctgatcatgaaatttcattttgtcaattttgtttcttaattatgaactttctaactcagcggtgtcataatttgataacaataaactattctactacatg |
37002055 |
T |
|
| Q |
217 |
aatttataagacgatgttgctctaatccatcaatttatcgaaactgcaaaaatttccc |
274 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37002056 |
aatgtataagacgatgttgctctaatccatcaatttatcgaaactgcaaaaatttccc |
37002113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University