View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5757_high_7 (Length: 322)
Name: NF5757_high_7
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 3078728 - 3078452
Alignment:
| Q |
16 |
ataagttaagaaaaatccatccacacacaagaatttcaattgattacttactgcatcttccattgttgcacgccaaccttgcatagatgataaaccatat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3078728 |
ataagttaagaaaaatccatccacacacaagaatttcaattgattacttactgcatcttccattgttgcacgccaaccttgcatagatgataaaccatat |
3078629 |
T |
|
| Q |
116 |
ctaagattgtcattttcaccatcttctgagaacttttcagttttaggaatgctgagagttgtccccattgctatatctgaattaaaacaaataaccatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3078628 |
ctaagattgtcattttcaccatcttctgagaacttttcagttttaggaatgctgagagttgttcccattgctatatctgaattaaaacaaataaccatcc |
3078529 |
T |
|
| Q |
216 |
attactttataaataccaaactatggaataaaaattcaaatacaacttttgcaaatctacgtgccaaatcaattagc |
292 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3078528 |
attaccttataaataccaaactatggaataaaaattcaaatacaacttttgcaaatctacgtgccaaatcaattagc |
3078452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 48832097 - 48831967
Alignment:
| Q |
59 |
ttacttactgcatcttccattgttgcacgccaaccttgcatagatgataaaccatatctaagattgtcattttcaccatcttctgagaacttttcagttt |
158 |
Q |
| |
|
||||| || ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| ||||||||| || ||||| || ||||||||||||| |
|
|
| T |
48832097 |
ttactcacagcatcttccattgatgcacgccagccttgcattgatgataaaccatatctaagacggtcattttcgccgtcttcagaaaacttttcagttt |
48831998 |
T |
|
| Q |
159 |
taggaatgctgagagttgtccccattgctat |
189 |
Q |
| |
|
| ||| | |||||| | | ||||||||||| |
|
|
| T |
48831997 |
tgggagtactgagatatattcccattgctat |
48831967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University