View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_high_8 (Length: 313)
Name: NF5757_high_8
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 29354440 - 29354149
Alignment:
| Q |
4 |
tcaaaagcttcttaatcacaagaggcaaagctaaagcgttcgtttcaacaacctctttccctttcttgcaatcacataaacaatccaacacaccaagtgc |
103 |
Q |
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| T |
29354440 |
tcaaaagcttcttaatcacaagaggcaaagctaaagcgttcgtttgaacaacctctttccctttcttgcaatcacataaacaatccaacacaccaagtgc |
29354341 |
T |
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| Q |
104 |
tttctcacatatccctttttctccatcaacaattgtttcaagcaaaaatgaaaccaaacctaattcaacaaacttttcactaatttcatctctattgttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
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| T |
29354340 |
tttctcacatatccctttttctccatcaacaattgtttcaagcaaaaatgaaaccaaacccaattcaacaaacctttcactaatttcatctctatttttc |
29354241 |
T |
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| Q |
204 |
gcggatgaaaccaacttgaaaattgtggtcaaacatgcttttgtagcacttgacccaattggttccttaacaatcttaaccaaaccctcaac |
295 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29354240 |
gccgatgaaaccaacttgaaaattgtggtcaaacatgcttttgtagcacttgacccaattggttccttaacaatcttaaccaaaccctcaac |
29354149 |
T |
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