View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_low_10 (Length: 306)
Name: NF5757_low_10
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 93 - 288
Target Start/End: Original strand, 28833629 - 28833825
Alignment:
| Q |
93 |
cctcaaacaatctttgacatgataacttgctacctaagggacagtaaaaatttaactctcaaataagtattaaatgatgaaagaaacactaaagccaaat |
192 |
Q |
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| T |
28833629 |
cctcaaacaatctttgacatgataacttgctacctaagggacagtaaaaatttaactctcaaataagtattaaatgatgaaagaaatactaaagccaaat |
28833728 |
T |
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| Q |
193 |
tatataaagtgtgaacatattgct-nnnnnnnngtttgctcatatcaacacactaatttactatttaattttagacttgaccttataatatatgatt |
288 |
Q |
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| T |
28833729 |
tatataaagtgtgatcatattgctaaaaaaaaagtttggtcatatcaacacactaatttactatttaattttagacttgaccttataatatatgatt |
28833825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 28833583 - 28833638
Alignment:
| Q |
16 |
atcagactatacgatgtttttcaagtttacttttagcaagttttaacctcaaacaa |
71 |
Q |
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| T |
28833583 |
atcagactatacgatgtttttcaagtttagtttttgcaagttttaacctcaaacaa |
28833638 |
T |
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