View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_low_12 (Length: 263)
Name: NF5757_low_12
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 43437352 - 43437101
Alignment:
| Q |
1 |
tgagatgcttggttatattcttctgcagcaaataccagggttgcggatgcaggactgggaaatatagcgtggaaagaaagagttgacgcgtggaagatga |
100 |
Q |
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| T |
43437352 |
tgagatgcttggttatattcttctgcagcaaataccagggttgcggatgcaggactgggaaatatagcgtggaaagaaagagttgacgcgtggaagatga |
43437253 |
T |
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| Q |
101 |
agaaggaaaagaatgctgttccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtaccagttgatgattc |
200 |
Q |
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| T |
43437252 |
agaaggaaaagaatgctgttccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtacctgttgatgattc |
43437153 |
T |
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| Q |
201 |
gttgttgttagtatttcctttattacctctcacatttattataagccccttt |
252 |
Q |
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| T |
43437152 |
gttgttgttagtatttcctttattacctctctcatttattataagccccttt |
43437101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 13827738 - 13827487
Alignment:
| Q |
1 |
tgagatgcttggttatattcttctgcagcaaataccagggttgcggatgcaggactgggaaatatagcgtggaaagaaagagttgacgcgtggaagatga |
100 |
Q |
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| T |
13827738 |
tgagatgtttggttatattcttgtgcagcaaatacaaggattgtcgacgcaaaattgggcaatgtagcatggagagaaagagttgacggctggaagatga |
13827639 |
T |
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| Q |
101 |
agaaggaaaagaatgctgttccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtaccagttgatgattc |
200 |
Q |
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| T |
13827638 |
agccagaaaagaatgctgctccgatgagcacaggccaagctgcttctgaaagaggggctggagatattgatggcagatctgatgtccttgctgatgattc |
13827539 |
T |
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| Q |
201 |
gttgttgttagtatttcctttattacctctcacatttattataagccccttt |
252 |
Q |
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| T |
13827538 |
attgttgtgagtatttcctttactatctctgttatttattatatgccccttt |
13827487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 9476594 - 9476728
Alignment:
| Q |
24 |
tgcagcaaataccagggttgcggatgcaggactgggaaatatagcgtggaaagaaagagttgacgcgtggaagatgaagaagg---aaaagaatgctgtt |
120 |
Q |
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| T |
9476594 |
tgcagcaaacatcagggttgttgaaccaggattgggtaatgtagcttggaaagaaagagttgatggctggaaaatgaagcacgataataagaatactgct |
9476693 |
T |
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| Q |
121 |
ccaatgagctcaagccaagcttcttctgaaagagg |
155 |
Q |
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| T |
9476694 |
ccaatgagcacaggtcaagctacttctgaaagagg |
9476728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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