View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_low_17 (Length: 240)
Name: NF5757_low_17
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_low_17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 32489132 - 32488951
Alignment:
| Q |
59 |
tagataaaaagatcaaaagttaagtctgatgtccatcatgtcaaaacagacttggattaaaaaatagagatagagatattgtcataccatgttcagcagt |
158 |
Q |
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| T |
32489132 |
tagataaagagatcaaaagttaagtctgatgtccatcatgtcaaaacagacttggattaaaaaatagagatagagatattgtcataccatgttcagcagt |
32489033 |
T |
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| Q |
159 |
gtatatgtattgatttacatatggatgtattgatgttcttttaagatgagactagtgtcgttgaaaatataatatcaacatt |
240 |
Q |
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| T |
32489032 |
gtatatgtattgatttacatatggatgtattgatgttcttttaagatgagactagtgtcgttgaaaatataatatcaacatt |
32488951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 32177034 - 32176862
Alignment:
| Q |
61 |
gataaaaagatcaaaagttaagtctgatgtccatcatgtcaaaacagacttggattaaaaaa-tagagatagagatattgtcataccatgttcagcagtg |
159 |
Q |
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| T |
32177034 |
gataaagagatgaaaagttaaatctggtgtctatgttgttaaaacagacttgaaaaaaaaaaatatagatagagatgttgtcatatcatgttcagacgtg |
32176935 |
T |
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| Q |
160 |
tatatgtattgatttacatatggatgtattgatgttcttttaagatgagactagtgtcgttgaaaatataatatcaac |
237 |
Q |
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| T |
32176934 |
tc-----attgatttacatatagatttatagatgttattttgaaatgagactagtgtcattgaaaatattatatcaac |
32176862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 32179706 - 32179537
Alignment:
| Q |
61 |
gataaaaagatcaaaagttaagtctgatgtccatcatgtcaaaacagacttggattaaaaaatagagatagagatattgtcataccatgttcagcagtgt |
160 |
Q |
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| T |
32179706 |
gataaagagatcaaaagttaaatctcatgtctaaaatgtctaaatagacttggaataaaaaaaa-aga---agctgttgtcatactatgttcagcaacat |
32179611 |
T |
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| Q |
161 |
atatgtattgatttacatatggatgtattgatgttcttttaagatgagactagtgtcgttgaaaatataatatc |
234 |
Q |
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| T |
32179610 |
gtatgtattgatttatatatagatttatagatattattttgcgatgagactagggtcattgaaaatacaatatc |
32179537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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