View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_low_5 (Length: 340)
Name: NF5757_low_5
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 32966062 - 32966359
Alignment:
| Q |
18 |
agcttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaatatcactcatttattctcatagcattttgttttactttt |
117 |
Q |
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| T |
32966062 |
agcttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaatatcactcatt---------------ttgttttactttt |
32966146 |
T |
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| Q |
118 |
aaatttaaataaagtttgatacaaaatgattgaattatacaggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctgga |
217 |
Q |
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| T |
32966147 |
aaatttaaataaagtgtgatacaaaatgattgaattatacaggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctgga |
32966246 |
T |
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| Q |
218 |
gctgccataattgtgtctctacaacaactaaaaagcttacttggcatcacacattttactaaagagatgggcattattcctgtcatgcattctgtttttc |
317 |
Q |
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| T |
32966247 |
gctgccataattgtgtctctacaacaactaaaaagcttacttggcatcacacattttactaaagagatgggcattattcctgtcatgcattctgtttttc |
32966346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 32954956 - 32955072
Alignment:
| Q |
157 |
caggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctggagctgccataattgtgtctctacaacaactaaaaagctta |
256 |
Q |
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| T |
32954956 |
caggctaggatttatcattgattttttatccaaagcaatcttaattggattcatggctggagctgctataattgtgtctttgcaacaacttaagagccta |
32955055 |
T |
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| Q |
257 |
cttggcatcacacattt |
273 |
Q |
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| T |
32955056 |
cttggaatcacacattt |
32955072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 3174138 - 3174231
Alignment:
| Q |
153 |
tatacaggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctggagctgccataattgtgtctctacaacaact |
246 |
Q |
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| T |
3174138 |
tatacaggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcactacaacaact |
3174231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 46482571 - 46482629
Alignment:
| Q |
21 |
ttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaat |
79 |
Q |
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| T |
46482571 |
ttttacttcaaaattctctgctgatctctttcaagcagctcttggaattctaaggtaat |
46482629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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