View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5757_low_6 (Length: 327)
Name: NF5757_low_6
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5757_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 32194865 - 32195157
Alignment:
| Q |
22 |
atgttgccataagaatctggaatgttatttccatcaaagttgttgttatcaagttgactgcaagaacaataaaatgctttaaaaatctatgtgcaagcaa |
121 |
Q |
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| T |
32194865 |
atgttgccataagaatctggaatgctatttccaccaaagttgttgttatcaagttgactgcaagaacaataaaatgctttaaaaatctatgtgcaagcaa |
32194964 |
T |
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| Q |
122 |
aatatatttatgcattcagttaatactgttaaagcaacaaacatttaaaaagaggttataaaagctctacaatgacaaaagtagcagctattcagttctc |
221 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32194965 |
aatatatttatgcattcagttaatattgttaaagcaacaaacatttaaaaagaggttaaaaaagctctacaatgacaaaagtagcagctattcagttctc |
32195064 |
T |
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| Q |
222 |
attctcctacacactctctcaagtccaattgtactcgaggttttaaatagcagtcgtggtagctgttgcagtcacgttgaagtctttgatatt |
314 |
Q |
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| T |
32195065 |
attctcctacacactctctcaagtccaattgtactcgaggttttaaatagcagtcgtggtaactgttgtggtcacgttgaagtctttgatatt |
32195157 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 28270924 - 28270862
Alignment:
| Q |
22 |
atgttgccataagaatctggaatgttatttccatcaaagttgttgttatcaagttgactgcaa |
84 |
Q |
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|||||| ||||||||||||||||| ||||||| |||||||| ||||| |||||||| |||||| |
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| T |
28270924 |
atgttggcataagaatctggaatgctatttccttcaaagttattgttgtcaagttggctgcaa |
28270862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 28285910 - 28285844
Alignment:
| Q |
30 |
ataagaatctggaatgttatttccatcaaagttgttgttatcaagttgactgcaagaacaataaaat |
96 |
Q |
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||||| ||| |||||| ||||||| || ||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
28285910 |
ataagtatccggaatgctatttccttcgaagttattgttgtcaagttgactgcaagaacaagaaaat |
28285844 |
T |
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