View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5757_low_9 (Length: 309)

Name: NF5757_low_9
Description: NF5757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5757_low_9
NF5757_low_9
[»] chr2 (4 HSPs)
chr2 (1-150)||(9423104-9423253)
chr2 (259-296)||(11994665-11994702)
chr2 (259-296)||(12248227-12248264)
chr2 (256-296)||(32682178-32682218)
[»] chr5 (5 HSPs)
chr5 (53-86)||(42124025-42124058)
chr5 (256-296)||(41713820-41713860)
chr5 (53-86)||(34240087-34240120)
chr5 (133-217)||(41571630-41571714)
chr5 (256-296)||(42123268-42123308)
[»] chr4 (1 HSPs)
chr4 (256-295)||(11117932-11117971)
[»] chr3 (2 HSPs)
chr3 (134-193)||(8523528-8523587)
chr3 (259-296)||(8522891-8522928)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9423104 - 9423253
Alignment:
Q  1 aagagttcctaattggttacttgaaaattgaaatagtggattcatcagcatatttgaacctctctcaaaacttgttcacgtcaatataaaaatactcagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9423104 aagagttcctaattggttacttgaaaattgaaatagtggattcatcagcatatttgaacctctctcaaaacttgttcacgtcaacagaaaaatactcagg 9423203  T
Q  101 gagtcaatgagtcgtggatacgacctatgcattcttgatcttagttataa 150  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  9423204 gagtcaatgagtcatggatacgacctatgcattctttatcttagttataa 9423253  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 11994665 - 11994702
Alignment:
Q  259 tattgatttgtcaagaaataaatttgaaggggagattc 296  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  11994665 tattgatttgtcaagaaacaaatttgaaggagagattc 11994702  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 12248264 - 12248227
Alignment:
Q  259 tattgatttgtcaagaaataaatttgaaggggagattc 296  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  12248264 tattgatttgtcaagaaacaaatttgaaggagagattc 12248227  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 32682178 - 32682218
Alignment:
Q  256 aagtattgatttgtcaagaaataaatttgaaggggagattc 296  Q
    ||||||||||||||||||||| | ||||||||| |||||||    
T  32682178 aagtattgatttgtcaagaaacagatttgaaggagagattc 32682218  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 42124058 - 42124025
Alignment:
Q  53 tttgaacctctctcaaaacttgttcacgtcaata 86  Q
    ||||||||||||||||||||||||||||||||||    
T  42124058 tttgaacctctctcaaaacttgttcacgtcaata 42124025  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 41713820 - 41713860
Alignment:
Q  256 aagtattgatttgtcaagaaataaatttgaaggggagattc 296  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  41713820 aagtattgatttttcaagaaataaatttgatggggagattc 41713860  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 34240087 - 34240120
Alignment:
Q  53 tttgaacctctctcaaaacttgttcacgtcaata 86  Q
    ||||||||||||||||||||||||||| ||||||    
T  34240087 tttgaacctctctcaaaacttgttcacatcaata 34240120  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 41571630 - 41571714
Alignment:
Q  133 tcttgatcttagttataacttacttgctggtgacataattttgacaatttgcaatgcaagttctcttgaattgctcaacttggca 217  Q
    |||||||||||||| ||||||| | || ||||||||   || | |||||||||||  || ||| ||| |||||||||||||||||    
T  41571630 tcttgatcttagttttaacttattagccggtgacatctcttcgtcaatttgcaatagaacttcacttcaattgctcaacttggca 41571714  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 42123308 - 42123268
Alignment:
Q  256 aagtattgatttgtcaagaaataaatttgaaggggagattc 296  Q
    |||||||||| |||||||||| ||||||||||| |||||||    
T  42123308 aagtattgatatgtcaagaaacaaatttgaaggagagattc 42123268  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 11117971 - 11117932
Alignment:
Q  256 aagtattgatttgtcaagaaataaatttgaaggggagatt 295  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  11117971 aagtattgatttgtcaagaaacaaatttgaaggagagatt 11117932  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 8523587 - 8523528
Alignment:
Q  134 cttgatcttagttataacttacttgctggtgacataattttgacaatttgcaatgcaagt 193  Q
    |||||||||||||||||||||||  | ||||||||   |||| |||||||||||||||||    
T  8523587 cttgatcttagttataacttactaaccggtgacatctctttgtcaatttgcaatgcaagt 8523528  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 8522928 - 8522891
Alignment:
Q  259 tattgatttgtcaagaaataaatttgaaggggagattc 296  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  8522928 tattgatttgtcaagaaacaaatttgaaggcgagattc 8522891  T

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