View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5758-Insertion-1 (Length: 392)
Name: NF5758-Insertion-1
Description: NF5758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5758-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 35681641 - 35681273
Alignment:
| Q |
7 |
agtacccttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatcatgagtgg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35681641 |
agtacccttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataaaatatgcataatattgatcatgagtgg |
35681542 |
T |
|
| Q |
107 |
aggttttgtttatcaagaaactgaactaataggatagcagcaaggtgataatgttgaagaataggattgcagagattaaaaatatcacaccttaagaaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35681541 |
aggttttgtttatcaagaaactgaactaataggatagcggcaaggtgataatgttgaagaataggattgcagagattaaaaacatcacaccttaagaaaa |
35681442 |
T |
|
| Q |
207 |
tgaaggcaaagtatggatccttataaatgtatttattgtgtttgcccattgtgtgtacccttcctacttcttccacatcatgaagcaaccgcaaccaatg |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35681441 |
tgaaggcaaagtatggatccttataaatgtatttattgtgtttgcccattgtgtgtacccttcctacttcttccacatcatggcgcaaccgcaaccaatg |
35681342 |
T |
|
| Q |
307 |
agccactgtttctggattgaagcaccgacctttctcagcaaaattgtctatcttcacgtcggacgcatc |
375 |
Q |
| |
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| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681341 |
acccactgtttctggattgaagcactgacctttctcagcaaaattgtctatcttcacgtcggacgcatc |
35681273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 31635530 - 31635407
Alignment:
| Q |
7 |
agtacccttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatcatgagtgg |
106 |
Q |
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||||||||| || ||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||| |
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| T |
31635530 |
agtacccttggtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataatattgatcaagagtgg |
31635431 |
T |
|
| Q |
107 |
aggttttgtttatcaagaaactga |
130 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
31635430 |
aggctttgtttatcaagaaactga |
31635407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 254 - 375
Target Start/End: Original strand, 32535070 - 32535191
Alignment:
| Q |
254 |
attgtgtgtacccttcctacttcttccacatcatgaagcaaccgcaaccaatgagccactgtttctggattgaagcaccgacctttctcagcaaaattgt |
353 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32535070 |
attgtgtgtacccttcctacttcttccacatcataacacaaccgcagccaatgagctactgtttctggattgaagcactcacctttctcagcaaaattgt |
32535169 |
T |
|
| Q |
354 |
ctatcttcacgtcggacgcatc |
375 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
32535170 |
ctatcttcacgtcggacgcatc |
32535191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 37192730 - 37192603
Alignment:
| Q |
14 |
ttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatcatgagtggaggtttt |
113 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || | ||| |
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| T |
37192730 |
ttagtctaacgtttcttggtcccacttcatataagcctttaataaagcttaaaaatgcattcataagatatgcataatattgatcaagagtagaagcttt |
37192631 |
T |
|
| Q |
114 |
gtttatcaagaaactgaactaataggat |
141 |
Q |
| |
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|||| |||||||||||| ||||||||| |
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| T |
37192630 |
gtttttcaagaaactgacataataggat |
37192603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 37192233 - 37192119
Alignment:
| Q |
140 |
atagcagcaaggtgataatgttgaagaataggattgcagagattaaaaatatcacaccttaagaaaatgaaggcaaagtatggatccttataaatgtatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||| |
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| T |
37192233 |
atagcagcaaggtgataatgttgaagaataggattgcagagattaaaaacatcacaccttaagaaaatgaaggcataggatggatccttagaaatgtatt |
37192134 |
T |
|
| Q |
240 |
tattgtgtttgccca |
254 |
Q |
| |
|
||||||||| |||| |
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|
| T |
37192133 |
cattgtgtttcccca |
37192119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 4302843 - 4302720
Alignment:
| Q |
7 |
agtacccttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatcatgagtgg |
106 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||| |
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| T |
4302843 |
agtacccttagtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataatattgatcaagagtgg |
4302744 |
T |
|
| Q |
107 |
aggttttgtttatcaagaaactga |
130 |
Q |
| |
|
||| |||||||||||||||||||| |
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|
| T |
4302743 |
aggctttgtttatcaagaaactga |
4302720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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