View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5758-Insertion-4 (Length: 191)
Name: NF5758-Insertion-4
Description: NF5758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5758-Insertion-4 |
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| [»] scaffold0236 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 5570006 - 5569829
Alignment:
| Q |
5 |
acagaatcggtatgttgcgggacacaatcaggaggttgttcctgttgagggtgcagttcgaaattcagacttagccactgatgacggcaacacagtacga |
104 |
Q |
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| T |
5570006 |
acagaatcagtatgttgcgggacacaatcaggaggttgttcctgctgagggtgcagttcgaaattcagacttagccactgatgacagcaacacagtacga |
5569907 |
T |
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| Q |
105 |
catggagatggtccagtgcagcatattaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatat |
182 |
Q |
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| T |
5569906 |
catggagatggtccagtgcagcatattaatcctaacatacaacaggatatggacctttaacaaggaatctatgaatat |
5569829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 5744 - 5896
Alignment:
| Q |
10 |
atcggtatgttgcgggacacaatcaggaggttgttcctgttgagggtgcagttcgaaattcagacttagccactgatgacggcaacacagtacgacatgg |
109 |
Q |
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| T |
5744 |
atcggtatgttgcaggagaaaatcaagaggttgtccttgttgagcgtgaagttcgaaattcagacctagccactgatgacaataacacaatacgacatgg |
5843 |
T |
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| Q |
110 |
agatggtccagtgcagcatattaatcctaacatacaacaggatatggaccttt |
162 |
Q |
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| T |
5844 |
cgatggtctagtacagcatattaatcctaacatacaacatgatatggaccttt |
5896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 2631089 - 2631178
Alignment:
| Q |
105 |
catggagatggtccagtgcagca---tattaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatatgataagagg |
191 |
Q |
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| T |
2631089 |
catggagatggtctagtgcagcaacatattcatcctaacttacaacaagatatggacctttggcatagaatccgtgagtatgataagagg |
2631178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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