View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5758_low_3 (Length: 328)
Name: NF5758_low_3
Description: NF5758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5758_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 8522398 - 8522102
Alignment:
| Q |
13 |
gagtgagatgaaggacaagaatgacgaggaaccatagttcaatcacgaatcagaattaga------tggtgcaaatgtcgtagttttattgttgtaatta |
106 |
Q |
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| T |
8522398 |
gagtgaaaagaaggacaagaatgacgaggaaccaaagttcaatcacgaatcagaatcagaatcagatggtgcaaatgtcgtagttttgttgttgtaatta |
8522299 |
T |
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| Q |
107 |
ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttgtggtctcagg |
206 |
Q |
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| T |
8522298 |
ttttctcttttgtctgttgggtttttactttctgttaaaacaagcttgactcttttgatcttgctagtttgattttcagttgtaagtttatggtctcagg |
8522199 |
T |
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| Q |
207 |
tctgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaatttatacgacc |
303 |
Q |
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| T |
8522198 |
tctgtttataagtgcatgccacaagttgtgttatataataaaattccaagttcatgtatatgttagtgtataaaatataattcaaatttatatgacc |
8522102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 42122739 - 42122646
Alignment:
| Q |
49 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctgtt |
142 |
Q |
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| T |
42122739 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtt |
42122646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 42116966 - 42116886
Alignment:
| Q |
59 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
139 |
Q |
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| T |
42116966 |
gaatcagaatcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttct |
42116886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 42128134 - 42128044
Alignment:
| Q |
49 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttct |
139 |
Q |
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| T |
42128134 |
gttcaaccatgaatcagaatcagatggtgcaaatgtcatagttttattgttctagttattttctctattgtgtattagttttttactttct |
42128044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 42116854 - 42116793
Alignment:
| Q |
209 |
tgtttataagtgcacgccacatgttgtgttatataataaaattccaagttcatgtatatgtt |
270 |
Q |
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| T |
42116854 |
tgtttacatgtgcatgccacaagatgtgttatataataaaattccaagtttatatatatgtt |
42116793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 41572860 - 41572910
Alignment:
| Q |
65 |
gaattagatggtgcaaatgtcgtagttttattgttgtaattattttctctt |
115 |
Q |
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| T |
41572860 |
gaattagatggtgcagatgtgatagttttattgttctgattattttctctt |
41572910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 11117396 - 11117289
Alignment:
| Q |
49 |
gttcaatcacgaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgtctgttgggtttttactttctg-ttaaaac |
147 |
Q |
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| T |
11117396 |
gttcaaacatgaatcagaatcagatggtgcaaatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaat |
11117297 |
T |
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| Q |
148 |
aagcttga |
155 |
Q |
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| T |
11117296 |
aagcttga |
11117289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 25523884 - 25523943
Alignment:
| Q |
59 |
gaatcagaattagatggtgcaaatgtcgtagttttattgttgtaattattttctcttttgt |
119 |
Q |
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| T |
25523884 |
gaatcagaatcagatgatgcaaatgtcatagttt-attgttttagttattttctcttttgt |
25523943 |
T |
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