View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_high_12 (Length: 405)

Name: NF5759_high_12
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_high_12
NF5759_high_12
[»] chr6 (1 HSPs)
chr6 (128-398)||(8535173-8535442)
[»] chr1 (2 HSPs)
chr1 (260-398)||(49243313-49243454)
chr1 (130-214)||(49243221-49243305)
[»] scaffold0695 (2 HSPs)
scaffold0695 (61-123)||(3368-3430)
scaffold0695 (18-48)||(3338-3368)
[»] chr8 (4 HSPs)
chr8 (61-123)||(14093020-14093082)
chr8 (22-62)||(14118388-14118428)
chr8 (18-48)||(14093082-14093112)
chr8 (62-121)||(14130374-14130434)
[»] chr5 (1 HSPs)
chr5 (292-392)||(3382503-3382602)
[»] chr4 (1 HSPs)
chr4 (61-118)||(23104702-23104759)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 128 - 398
Target Start/End: Complemental strand, 8535442 - 8535173
Alignment:
Q  128 cagcaccgctatttccaacgaagaaatttccacggaaatcacgaattaatgtgccgtgcacgtgggttacttcttttttaatttaaattaaaggtgcaaa 227  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8535442 cagcaccgctatttccaacgaagaaattttcacgggaatcacgaattaatgtgccgtgcacgtgggttacttcttttttaatttaaattaaaggtgcaaa 8535343  T
Q  228 tcatatcttttgttttnnnnnnnnnnnnnnnntcacaaattgcgtgactttctctctctcacccaaaaattgtgcgactgtctcttggtttttgttttcg 327  Q
    ||||||||||| ||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8535342 tcatatcttttcttttaaaagaaaaagaaaaatcacaaattgcgtgactttctctctctcacccaaaaattgtgcgactgtctcttggtttttgttttcg 8535243  T
Q  328 ttgccgcatagacatagacagtttcatatctgcatcataactgttttccttcccattttgccttcatctca 398  Q
    ||||||||||||||||||||||||||||| |||||||||| || || |||||||||||||||||| |||||    
T  8535242 ttgccgcatagacatagacagtttcatatttgcatcataattg-ttgccttcccattttgccttcgtctca 8535173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 260 - 398
Target Start/End: Original strand, 49243313 - 49243454
Alignment:
Q  260 tcacaaattgcgtgactttctc---tctctcacccaaaaattgtgcgactgtctc-ttggtttttgttttcgttgccgcatagacatagacagtttcata 355  Q
    ||||||||||||||||||||||   |||||||||||||||||| |||||| |||| ||||||||||||||||||||| |   | ||||||||||||||||    
T  49243313 tcacaaattgcgtgactttctcctctctctcacccaaaaattgcgcgactttctctttggtttttgttttcgttgccacgctgccatagacagtttcata 49243412  T
Q  356 tctgcatcataactgttttccttcccattttgccttcatctca 398  Q
    | ||||||| ||||| || ||||||||| |||||||| |||||    
T  49243413 tttgcatcacaactg-ttgccttcccatcttgccttcgtctca 49243454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 49243221 - 49243305
Alignment:
Q  130 gcaccgctatttccaacgaagaaatttccacggaaatcacgaattaatgtgccgtgcacgtgggttacttcttttttaatttaaa 214  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| | | ||||| ||||||    
T  49243221 gcaccgctatttccaacgaaggaatttccacgggaatcacgaattaatgtgtcgtgcacgtgggttacatatcttttattttaaa 49243305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 3368 - 3430
Alignment:
Q  61 agaatcaattttacataatcaattcaattacaacaaatttttgtcactgcataaccaaatatt 123  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3368 agaatcaattttacataatcaattcaattacaataaatttttgtcactgcataaccaaatatt 3430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 3338 - 3368
Alignment:
Q  18 gaaattggaatggatagataccggttgggga 48  Q
    |||||||||||||||||||||||||||||||    
T  3338 gaaattggaatggatagataccggttgggga 3368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 14093082 - 14093020
Alignment:
Q  61 agaatcaattttacataatcaattcaattacaacaaatttttgtcactgcataaccaaatatt 123  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14093082 agaatcaattttacataatcaattcaattacaataaatttttgtcactgcataaccaaatatt 14093020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 14118428 - 14118388
Alignment:
Q  22 ttggaatggatagataccggttggggacgccaagtatgtag 62  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  14118428 ttggaatggatagataccggttggggacgcgaagtatgtag 14118388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 14093112 - 14093082
Alignment:
Q  18 gaaattggaatggatagataccggttgggga 48  Q
    |||||||||||||||||||||||||||||||    
T  14093112 gaaattggaatggatagataccggttgggga 14093082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 14130434 - 14130374
Alignment:
Q  62 gaatcaattttacataatcaattca-attacaacaaatttttgtcactgcataaccaaata 121  Q
    ||||||||||||||||||||||| |  |||||  |||||||||| |||| |||||||||||    
T  14130434 gaatcaattttacataatcaatttattttacattaaatttttgttactgtataaccaaata 14130374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 3382503 - 3382602
Alignment:
Q  292 aaaaattgtgcgactgtctcttggtttttgttttcgttgccgcatagacatagacagtttcatatctgcatcataactgttttccttcccattttgcctt 391  Q
    |||||||| |||| ||||||||||||||||||||||||| ||    | ||| ||||||||||||| ||||||||||||| || | |||||||||||||||    
T  3382503 aaaaattgcgcgattgtctcttggtttttgttttcgttgtcgtgctgccattgacagtttcatatttgcatcataactg-ttgcattcccattttgcctt 3382601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 23104702 - 23104759
Alignment:
Q  61 agaatcaattttacataatcaattcaattacaacaaatttttgtcactgcataaccaa 118  Q
    |||||||||||||||||||||||||| ||| ||  |||||||||||| ||||||||||    
T  23104702 agaatcaattttacataatcaattcatttaaaattaatttttgtcaccgcataaccaa 23104759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University