View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_high_15 (Length: 400)

Name: NF5759_high_15
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_high_15
NF5759_high_15
[»] chr3 (38 HSPs)
chr3 (1-243)||(13161160-13161402)
chr3 (1-240)||(13171211-13171450)
chr3 (1-240)||(13344269-13344508)
chr3 (1-243)||(13289845-13290087)
chr3 (1-240)||(13333084-13333323)
chr3 (4-233)||(9849922-9850151)
chr3 (3-233)||(10433701-10433931)
chr3 (4-233)||(9839044-9839273)
chr3 (3-233)||(10127110-10127340)
chr3 (1-169)||(11130747-11130915)
chr3 (1-169)||(11159738-11159906)
chr3 (1-167)||(10889486-10889652)
chr3 (1-169)||(8861466-8861634)
chr3 (4-224)||(10184425-10184645)
chr3 (1-233)||(11769414-11769646)
chr3 (1-224)||(10500754-10500977)
chr3 (3-230)||(10663708-10663935)
chr3 (3-224)||(10077451-10077672)
chr3 (3-222)||(10363466-10363685)
chr3 (10-169)||(11148575-11148734)
chr3 (3-224)||(10088972-10089193)
chr3 (3-224)||(10195855-10196076)
chr3 (4-233)||(10527541-10527770)
chr3 (4-233)||(10580784-10581013)
chr3 (3-233)||(10032185-10032415)
chr3 (310-386)||(14256399-14256475)
chr3 (3-233)||(10260880-10261110)
chr3 (3-224)||(11781648-11781869)
chr3 (310-386)||(18844702-18844778)
chr3 (310-386)||(4406010-4406086)
chr3 (310-385)||(11215154-11215229)
chr3 (4-233)||(10375502-10375731)
chr3 (3-224)||(10517667-10517888)
chr3 (40-140)||(11153524-11153624)
chr3 (310-386)||(13073456-13073532)
chr3 (248-386)||(14320019-14320157)
chr3 (332-386)||(9389691-9389745)
chr3 (249-287)||(11215102-11215140)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-240)||(135538-135777)
scaffold0002 (1-240)||(145589-145828)
scaffold0002 (108-240)||(153894-154026)
[»] chr2 (7 HSPs)
chr2 (249-386)||(26868743-26868880)
chr2 (4-231)||(26907080-26907307)
chr2 (310-385)||(20416126-20416201)
chr2 (316-386)||(28378288-28378358)
chr2 (334-385)||(21170962-21171013)
chr2 (248-287)||(24423899-24423938)
chr2 (249-287)||(20416074-20416112)
[»] chr4 (5 HSPs)
chr4 (259-386)||(15205812-15205939)
chr4 (1-244)||(17852569-17852812)
chr4 (309-389)||(19572730-19572810)
chr4 (310-386)||(16306865-16306941)
chr4 (310-386)||(3374576-3374652)
[»] chr6 (2 HSPs)
chr6 (10-235)||(31679388-31679613)
chr6 (310-386)||(18924521-18924597)
[»] scaffold0016 (2 HSPs)
scaffold0016 (310-386)||(193660-193736)
scaffold0016 (249-287)||(193750-193788)
[»] chr5 (3 HSPs)
chr5 (310-386)||(34061159-34061235)
chr5 (310-386)||(17448307-17448383)
chr5 (310-386)||(20560914-20560990)
[»] chr8 (3 HSPs)
chr8 (1-224)||(44957354-44957577)
chr8 (310-386)||(18155466-18155542)
chr8 (1-224)||(11485218-11485441)
[»] chr1 (1 HSPs)
chr1 (9-232)||(826099-826322)
[»] scaffold0201 (1 HSPs)
scaffold0201 (310-381)||(106-177)
[»] scaffold0272 (1 HSPs)
scaffold0272 (302-386)||(11764-11848)
[»] chr7 (1 HSPs)
chr7 (261-385)||(25213870-25213994)
[»] scaffold0195 (1 HSPs)
scaffold0195 (277-318)||(31593-31634)
[»] scaffold0485 (1 HSPs)
scaffold0485 (310-386)||(601-677)
[»] scaffold0013 (1 HSPs)
scaffold0013 (310-386)||(264-340)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 13161160 - 13161402
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161160 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13161259  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  13161260 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttg 13161359  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgtggt 243  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  13161360 gtcgttactttcaaagcatgcatttggaagtgaagtccgtggt 13161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13171211 - 13171450
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13171211 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13171310  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  13171311 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttg 13171410  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13171411 gtcgttactttcaaagcatgcattcggaagtgaagaccgt 13171450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13344269 - 13344508
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13344269 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 13344368  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  13344369 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttg 13344468  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13344469 gtcgttactttcaaagcatgcattcggaagtgaagaccgt 13344508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 13289845 - 13290087
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13289845 ttgagggataaaagatttttgttggtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacag 13289944  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  13289945 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttg 13290044  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgtggt 243  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  13290045 gtcgttactttcaaagcatgcatttggaagtgaagtccgtggt 13290087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13333084 - 13333323
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||  |    
T  13333084 ttgagggataaaagatttttgttagtgttggatgacctgtggaatgacaattataatgattgggatgagttagtaactccactgattaacggcaaaaaag 13333183  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  13333184 gaagtagggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttg 13333283  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13333284 gtcgttactttcaaagcatgcattcggaagtgaagaccgt 13333323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 9849922 - 9850151
Alignment:
Q  4 agggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaa 103  Q
    ||||| |||||||||||||| ||| |||| ||| |||||||||| | |||||||||||||| |||  |||||| ||| || ||| | || ||| | ||||    
T  9849922 agggagaaaagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaa 9850021  T
Q  104 gtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtc 203  Q
    | | |||||| || |||||||||||||||||| |||| ||||| |||||||| ||||| || |||| | |||||| ||| ||| |||| || ||||||||    
T  9850022 gcatggtgattataacaacacgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatcaaatgaagattgttggtc 9850121  T
Q  204 gttactttcaaagcatgcattcggaagtga 233  Q
     ||||| |||||||||||||| ||||||||    
T  9850122 tttactctcaaagcatgcattgggaagtga 9850151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 10433931 - 10433701
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||| | |||||||||||||| |||  |||||| ||| || ||| | || ||| | |||    
T  10433931 gagggagaaaagatttttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccgga 10433832  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||| |||||||||||| |||| ||||| |||||||| |||||||| |||| | |||| | ||| ||| |||| || |||||||    
T  10433831 agcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggt 10433732  T
Q  203 cgttactttcaaagcatgcattcggaagtga 233  Q
    | ||||| || ||||||||||| || |||||    
T  10433731 ctttactctcgaagcatgcattgggcagtga 10433701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 9839044 - 9839273
Alignment:
Q  4 agggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaa 103  Q
    ||||| |||||||||||||| ||| |||| ||| |||||||||| | |||||||||||||| |||  |||||| ||| || ||| | || ||| | ||||    
T  9839044 agggagaaaagatttttgtttgtgttggatgatttgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacccggaa 9839143  T
Q  104 gtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtc 203  Q
    | | |||||| || ||||| |||||||||||| |||| ||||| |||||||| ||||| || |||| | |||||| ||| ||| |||| || ||||||||    
T  9839144 gcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatcaaatgaagattgttggtc 9839243  T
Q  204 gttactttcaaagcatgcattcggaagtga 233  Q
     ||||| |||||||||||||| ||||||||    
T  9839244 tttactctcaaagcatgcattgggaagtga 9839273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 10127110 - 10127340
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| |||||||||| |||||||| | || |||||||||||||||| |||||| ||| || ||||| || ||| | |||    
T  10127110 gagggaaaaaagatttttgtttgtgttggacgatctatggaatgacaattgtaatgattgggatgagctagtaagtcccttcattaatggaaaacctgga 10127209  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||| |||||||||||| |||| ||||| |||| ||| |||||||| |||  | || |    || |||||||| || |||||||    
T  10127210 agcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacgcacatttcctatacatgaactaaaagtactatcagatgaagattgttggt 10127309  T
Q  203 cgttactttcaaagcatgcattcggaagtga 233  Q
    | ||||| |||||||||||||| ||||||||    
T  10127310 ctttactatcaaagcatgcattgggaagtga 10127340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 11130915 - 11130747
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||| || |||||||||||||| ||| |||| || || |||||||| | ||||||||||||||||||  | |||||||| |||||||| || || |  |    
T  11130915 ttgagagacaaaagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatgaacttgtaactcctttgattaatggaaacaatg 11130816  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcata 169  Q
    |||| ||||| ||| |||||||||||||||||||| |||| ||||||||||| || |||||||||||||    
T  11130815 gaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcata 11130747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 11159906 - 11159738
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||| || |||||||||||||| ||| |||| || || |||||||| | ||||||||||||||||||  | |||||||| |||||||| || || |  |    
T  11159906 ttgagcgacaaaagatttttgtttgtgttggatgacctttggaatgacaattataatgattgggatgaacttgtaactcctttgattaatggaaacagtg 11159807  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcata 169  Q
    |||| ||||| ||| |||||||||||||||||||| |||| ||||||||||| || |||||||||||||    
T  11159806 gaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcata 11159738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10889486 - 10889652
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||| || |||||||||||||| ||| |||| || || |||||||| | ||||||||||||||||||  | |||||||| |||||||| || || |  |    
T  10889486 ttgagagacaaaagatttttgtttgtgttggatgacctatggaatgacaattataatgattgggatgaacttgtaactcctttgattaatggaaacagtg 10889585  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattca 167  Q
    |||| |||||  |||||||||||||||| |||||| |||| |||||||||||||||| |||||||||    
T  10889586 gaagcagggtcgtcatcacaacacgccagcaaaaagttgcagaggttgcacacacgtatcctattca 10889652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8861466 - 8861634
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||| || |||||||||||||| ||| |||| || || |||||||| | ||||||||| ||||||||  | |||||||| |||||||| || || |  |    
T  8861466 ttgagagacaaaagatttttgtttgtgttggatgacctatggaatgacaattataatgagtgggatgaacttgtaactcctttgattaatggaaacagtg 8861565  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcata 169  Q
    |||| ||||| ||| |||||||||||||||||||| |||| ||||||||||| || |||||||||||||    
T  8861566 gaagcagggtcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcata 8861634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 10184425 - 10184645
Alignment:
Q  4 agggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaa 103  Q
    ||||| |||||||||||||| ||  |||| |||||||||||||| |||||| |||||||||||||| |||||| ||| || ||| | || ||| | ||||    
T  10184425 agggagaaaagatttttgtttgtattggatgatctgtggaatgacagttatgatgattgggatgagctagtaagtcccttcattgatggaaaacctggaa 10184524  T
Q  104 gtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtc 203  Q
    | | |||||| || ||||| |||||| ||||| | || ||||| |||||||| |||||||| |||  | || | | ||| ||| |||| || ||||||||    
T  10184525 gcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacatgaactaaaacttctatcaaatgaagattgttggtc 10184624  T
Q  204 gttactttcaaagcatgcatt 224  Q
    |||||| ||||||||||||||    
T  10184625 gttactctcaaagcatgcatt 10184645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 11769414 - 11769646
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    |||||||| |||||||||||||| ||| | || ||| |||||||||| | |||||||||||||| |||  |||||| ||| || | ||| || ||| | |    
T  11769414 ttgagggagaaaagatttttgtttgtgttagatgatatgtggaatgacaattataatgattggggtgaactagtaagtcccttcagtaatggaaaacctg 11769513  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    |||| | |||||| || ||||||||||||| |||| |||| ||||| |||||||| |||||||| |||  | || | | ||| ||| |||| || |||||    
T  11769514 gaagcatggtgattataacaacacgccaacgaaaagttgctgaggtggcacacacatttcctatacatgaattaaaacttctatcaaatgaagattgttg 11769613  T
Q  201 gtcgttactttcaaagcatgcattcggaagtga 233  Q
    ||| ||||| |||||||||||||| ||||||||    
T  11769614 gtctttactctcaaagcatgcattgggaagtga 11769646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10500754 - 10500977
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    |||| ||||| |||||||||||| ||| |||||||  |||||||||| ||||||  ||| |||||||||||| ||||||| |||| |||| |  |||| |    
T  10500754 ttgatggatagaagatttttgtttgtgttggacgacatgtggaatgacagttatgttgactgggatgagttaataactcccttgactaacagagaaacag 10500853  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    || | |  ||||| || ||||||||| |||||||| |||| ||||| |||  ||| ||||||||||||| | |||| ||||| || |||||||| |||||    
T  10500854 gaggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttg 10500953  T
Q  201 gtcgttactttcaaagcatgcatt 224  Q
    | | ||||| || |||||||||||    
T  10500954 gactttactctcgaagcatgcatt 10500977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 10663708 - 10663935
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| | || |||||||||||||| | |||||||||||||  |||  ||| || ||| || ||| | || ||| | |||    
T  10663708 gagggagaaaagatttttgtttgtgttcgatgatctgtggaatgacaattataatgattggagtgaactagcaagtcccttcattgatggaaaacctgga 10663807  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||| ||| |||||||| |||| ||||| |||||||| |||||||| |||| | |||| | ||| ||| |||| || |||||||    
T  10663808 agcatggtgattataacaacgcgcgaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggt 10663907  T
Q  203 cgttactttcaaagcatgcattcggaag 230  Q
    | |||||||||||||||||||| |||||    
T  10663908 ccttactttcaaagcatgcattgggaag 10663935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 10077451 - 10077672
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    ||||||||||||||||||||| ||| | || ||| |||||||||| | ||||| ||||||||||||  | |||| ||| || ||| | || ||    |||    
T  10077451 gagggataaaagatttttgtttgtgttagatgatatgtggaatgacaattatagtgattgggatgaacttgtaagtcccttcattgatggaaagcatgga 10077550  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || |||||||||||||||||| |||| ||||| |||| ||| |||||||| |||||| |||| ||| | ||| |||| || |||||||    
T  10077551 agcatggtgattataacaacacgccaacaaaaagttgcagaggtggcacgcacatttcctatacatatattagaacctttatcaaatgaagattgttggt 10077650  T
Q  203 cgttactttcaaagcatgcatt 224  Q
      ||||||||||||||||||||    
T  10077651 atttactttcaaagcatgcatt 10077672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 10363685 - 10363466
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| ||||||| |||||| ||| ||||||||||||||||||| | |||||||||||||| |||  ||||||  || || ||| | || ||| | |||    
T  10363685 gagggagaaaagatatttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagccccttcattgatggaaaacctgga 10363586  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||| |||||| ||||| | || ||||| |||||||| |||||||| |||| | |||||| ||| ||| |||| || ||||||     
T  10363585 agcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagatcttctatcaaatgaagattgttgga 10363486  T
Q  203 cgttactttcaaagcatgca 222  Q
    | ||||| ||||||||||||    
T  10363485 ctttactctcaaagcatgca 10363466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 11148734 - 11148575
Alignment:
Q  10 aaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaagtaggg 109  Q
    |||||||||||||| ||| |||| ||  | |||||||| | ||||||||||||||||||  | ||||| || |||||||| || || |  ||||| ||||    
T  11148734 aaaagatttttgtttgtgttggatgacttatggaatgacaattataatgattgggatgaacttgtaacacctttgattaatggaaacagtggaagcaggg 11148635  T
Q  110 tgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcata 169  Q
    | ||| |||||||||||||||||||| |||| ||||||||||| || |||||||||||||    
T  11148634 tcatcgtcacaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcata 11148575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 10088972 - 10089193
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| |||| |||||||||||||| | |||||||||||||  ||   |||||| ||| || ||| | || ||| | |||    
T  10088972 gagggagaaaagatttttgtttgtgttggatgatctgtggaatgacaattataatgattggattgcactagtaagtcccttcattgatggaaaacctgga 10089071  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||| |||||| ||||| | || ||||| |||||||| |||||||| |||| | |||| | ||||||| |||| || ||||||     
T  10089072 agcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttctgtcaaatgaagattgttgga 10089171  T
Q  203 cgttactttcaaagcatgcatt 224  Q
    | ||||| ||||||||||||||    
T  10089172 ctttactctcaaagcatgcatt 10089193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 10195855 - 10196076
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| |||| |||||||||||||| | |||||||||||||  ||   |||||| ||| || ||| | || ||| | |||    
T  10195855 gagggagaaaagatttttgtttgtgttggatgatctgtggaatgacaattataatgattggattgcactagtaagtcccttcattgatggaaaacctgga 10195954  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||| |||||| ||||| | || ||||| |||||||| |||||||| |||| | |||| | ||||||| |||| || ||||||     
T  10195955 agcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttctgtcaaatgaagattgttgga 10196054  T
Q  203 cgttactttcaaagcatgcatt 224  Q
    | ||||| ||||||||||||||    
T  10196055 ctttactctcaaagcatgcatt 10196076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 10527541 - 10527770
Alignment:
Q  4 agggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaa 103  Q
    ||||| || ||||||||||| ||| |||| ||||| |||||||| | ||| ||||||||||||||| |||||| |||| | ||| | || ||| | ||||    
T  10527541 agggagaagagatttttgtttgtgttggatgatctatggaatgacaattacaatgattgggatgagctagtaagtccactcattgatggaaaacctggaa 10527640  T
Q  104 gtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtc 203  Q
    ||| |||||| || ||||| | ||||| |||| |||| ||||| |||| ||| |||||||| |||| | || | | | | ||| |||| || ||||||||    
T  10527641 gtatggtgattataacaacccaccaacgaaaagttgctgaggtggcacgcacatttcctatacataaactaaaacttttatcaaatgaagattgttggtc 10527740  T
Q  204 gttactttcaaagcatgcattcggaagtga 233  Q
     ||||| |||||||||||||| ||||||||    
T  10527741 tttactctcaaagcatgcattgggaagtga 10527770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 10580784 - 10581013
Alignment:
Q  4 agggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaa 103  Q
    ||||| |||||||||||||| ||| |||| |||||||||||||| | || |||||||||||||||| |||||| ||| || ||||| || ||| | ||||    
T  10580784 agggagaaaagatttttgtttgtgttggatgatctgtggaatgacaattgtaatgattgggatgagctagtaagtcccttcattaatggaaaacctggaa 10580883  T
Q  104 gtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtc 203  Q
    | | |||||| || ||||| |||||||||||| || |  || | ||||||| |||| || | ||||   |||| ||||| ||| |||| || ||||||||    
T  10580884 gcatggtgattataacaacgcgccaacaaaaagttacaaagatggcacacatgtttgctgtacataatttagaacctctatcaaatgaagattgttggtc 10580983  T
Q  204 gttactttcaaagcatgcattcggaagtga 233  Q
     ||||| |||||  ||||||| ||||||||    
T  10580984 tttactctcaaactatgcattgggaagtga 10581013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 10032185 - 10032415
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||  |||| |||||||||||||| | |||||||||||||| |||  |||||| ||| || ||| | || ||| | |||    
T  10032185 gagggagaaaagatttttgtttgttttggatgatctgtggaatgacaattataatgattggggtgaactagtaagtcccttcattgatggaaaacctgga 10032284  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||||||||||| |||| |||| ||||| |||  ||| |||||||| |||  | || | | ||| ||| |||| || |||||||    
T  10032285 agcatggtgattataacaacacgccaacgaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatcaaatgaagattgttggt 10032384  T
Q  203 cgttactttcaaagcatgcattcggaagtga 233  Q
    | ||||| |||||||||||||| || |||||    
T  10032385 ctttactctcaaagcatgcattgggcagtga 10032415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 14256399 - 14256475
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||    
T  14256399 aatcaccaaccatcaatctaacttctcctgaacaacaaacagcttctgaccaaccttcttcatctcaaacaaccatc 14256475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 10260880 - 10261110
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||| | |||||||||||||| |||  ||||||  || ||  || | || ||| | |||    
T  10260880 gagggagaaaagatttttgtttgtgttggacgatctgtggaatgacaattataatgattggggtgaactagtaagccccttcgttgatggaaaacctgga 10260979  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    || | |||||| || ||||| || ||||||||| |||| ||||| |||  ||| |||||||| |||  | || | | ||| ||  |||| ||||||||||    
T  10260980 agcatggtgattataacaacgcggcaacaaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatcgaatgaagactgttggt 10261079  T
Q  203 cgttactttcaaagcatgcattcggaagtga 233  Q
    | ||||| |||||||||||||| || |||||    
T  10261080 ctttactctcaaagcatgcattgggcagtga 10261110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 11781869 - 11781648
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| | || ||| |||||||||||  ||| |||||||||  |||| |||||| |||| | | | | || ||| | |||    
T  11781869 gagggagaaaagatttttgtttgtgttagatgatttgtggaatgatgattacaatgattggcttgagctagtaagtccactcaatgatggaaaacctgga 11781770  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    |||  |||||| || ||||| |||||||||||| |||| ||||| |||||||| ||||||||||||  | |||| ||||| ||  |||| || |||||||    
T  11781769 agttcggtgattataacaactcgccaacaaaaagttgcagaggtggcacacacatttcctattcatgcattagaacctctatctcatgaagattgttggt 11781670  T
Q  203 cgttactttcaaagcatgcatt 224  Q
    | ||||| || || ||||||||    
T  11781669 ctttactctcgaaacatgcatt 11781648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 18844702 - 18844778
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||    
T  18844702 aatcaccaaccatcaatctaacttctcctgaacaacaaacagcttctgaccaaccttctacatctcaaacaaccatc 18844778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 4406086 - 4406010
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    ||||| |||| ||| |||||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||    
T  4406086 aatcatcaaccatcaatctaacttctcctgaacatcaaacaacttctgaccaaccttctacatctcaaacaaccatc 4406010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 11215154 - 11215229
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccat 385  Q
    |||||||||| ||| |||||  |||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  11215154 aatcaccaaccatcaatctagcttctcctgaacaacaaacagcttctgaccaaccttctacatctcaaacaaccat 11215229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 10375731 - 10375502
Alignment:
Q  4 agggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaa 103  Q
    ||||| |||||||||||||| ||| |||| ||| |||||||||| | |||| ||||||||| |||  |||||| ||| || ||| | || ||| | ||||    
T  10375731 agggagaaaagatttttgtttgtgttggatgatttgtggaatgacaattattatgattggggtgaactagtaagtcccttcattgatggaaaacccggaa 10375632  T
Q  104 gtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtc 203  Q
    | | |||||| || ||||| ||||||| |||| ||||  |||| |||  ||| |||||||| |||  | || | | ||| ||  |||| |||||||||||    
T  10375631 gcatggtgattataacaacgcgccaacgaaaagttgctaaggtagcatgcacatttcctatacatgaactaaaacttctatcgaatgaagactgttggtc 10375532  T
Q  204 gttactttcaaagcatgcattcggaagtga 233  Q
     ||||| |||||||||||||| || |||||    
T  10375531 tttactctcaaagcatgcattgggtagtga 10375502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 10517667 - 10517888
Alignment:
Q  3 gagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacggga 102  Q
    |||||| |||||||||||||| ||| | || ||| |||||||||||  ||| |||||||||  |||  |||||| |||| | | | | || ||| | ||     
T  10517667 gagggagaaaagatttttgtttgtgttagatgatttgtggaatgatgattacaatgattggcttgaactagtaagtccactcaatgatggaaaacccggg 10517766  T
Q  103 agtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggt 202  Q
    |||  |||||| || ||||| |||||||||||| |||| ||||| |||||||| |||||||||||   | |||| ||||| ||  |||| || |||||||    
T  10517767 agttcggtgattataacaacgcgccaacaaaaagttgcagaggtggcacacacatttcctattcaggaattagaacctctatctcatgaagattgttggt 10517866  T
Q  203 cgttactttcaaagcatgcatt 224  Q
    | ||||| ||||| ||||||||    
T  10517867 ctttactctcaaaacatgcatt 10517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 11153624 - 11153524
Alignment:
Q  40 tggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaagtagggtgatcatcacaacacgccaacaaaaaattg 139  Q
    |||||||||| |||||| ||||  |||||  | ||||||||||||||| | || ||||  ||||| || ||||||||||||||||||||| ||||| |||    
T  11153624 tggaatgataattataacgattcagatgaacttgtaactccattgatttatggaaaaagtggaagcagagtgatcatcacaacacgccaagaaaaagttg 11153525  T
Q  140 c 140  Q
    |    
T  11153524 c 11153524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 13073532 - 13073456
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| || ||| ||| ||| ||||||||||||||| || |||||||||  ||| |||||||||||||||||    
T  13073532 aatcaccaaccatagatttaacttcacctgaacatcaaacaacttctgaccaacgttctacatctcaaacaaccatc 13073456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 14320019 - 14320157
Alignment:
Q  248 acaacaaactacctctgaacaaccccagcctaacccagaaaaccaaacagaaacccttaaccaatcaccaactatcgatctaatttctcctgaacatcaa 347  Q
    ||||||||||||||||||   ||| || |||||| | ||| | |||||||||| ||||||||||||||| |||    ||| || |  ||||||||| ||     
T  14320019 acaacaaactacctctgacttaccgcaacctaacactgaacaacaaacagaaaaccttaaccaatcacctactcaaaatcaaactattcctgaacaacac 14320118  T
Q  348 acagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    || ||  |||||||||| ||||||||||| |||||||||    
T  14320119 actgcctctgaccaaccttcttcatctcatacaaccatc 14320157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 9389691 - 9389745
Alignment:
Q  332 ttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||||  |||||| || |||||||||| ||| |||||||||||||||||    
T  9389691 ttctcctgaaccacaaacaacttctgaccaaccttctacatctcaaacaaccatc 9389745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 11215102 - 11215140
Alignment:
Q  249 caacaaactacctctgaacaaccccagcctaacccagaa 287  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  11215102 caacaaactaccactgaacaaccccagcctaacacagaa 11215140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 135777 - 135538
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  135777 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 135678  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  135677 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttg 135578  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  135577 gtcgttactttcaaagcatgcattcggaagtgaagaccgt 135538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 145828 - 145589
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  145828 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 145729  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  145728 gaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttg 145629  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  145628 gtcgttactttcaaagcatgcattcggaagtgaagaccgt 145589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 154026 - 153894
Alignment:
Q  108 ggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtcgtta 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  154026 ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta 153927  T
Q  208 ctttcaaagcatgcattcggaagtgaagtccgt 240  Q
    |||||||||||||||||||||||||||| ||||    
T  153926 ctttcaaagcatgcattcggaagtgaagaccgt 153894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 26868880 - 26868743
Alignment:
Q  249 caacaaactacctctgaacaaccccagcctaacccagaaaaccaaacagaaacccttaaccaatcaccaactatcgatctaatttctcctgaacatcaaa 348  Q
    ||||||| | ||||||| | |||||| |||| ||||||| | ||||||||||||||||||||||||||||||| | ||| || ||| |||||||| || |    
T  26868880 caacaaattgcctctgacctaccccaacctatcccagaacaacaaacagaaacccttaaccaatcaccaactaacaatcaaacttcacctgaacaacaca 26868781  T
Q  349 cagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    ||||| |||||||||| ||| |||||||||||||||||    
T  26868780 cagcttctgaccaaccttctacatctcaaacaaccatc 26868743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 26907080 - 26907307
Alignment:
Q  4 agggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaa 103  Q
    ||||| |||||||||||||| ||| |||| || |||||||| || | ||||| ||||||||| ||  | |||| ||| || ||| | || ||| | ||||    
T  26907080 agggagaaaagatttttgtttgtgttggatgacctgtggaacgacaattatagtgattgggaagaacttgtaagtcccttcattcatggaaaacctggaa 26907179  T
Q  104 gtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtc 203  Q
    | | |||||| || ||||| |||||||||||| |||| ||||| ||||| || |||||||| |||| | |||| ||||| |||  ||| || ||||||||    
T  26907180 gcatggtgattataacaacgcgccaacaaaaagttgcagaggtggcacatacatttcctatacataaattagaacctctatcaactgaagattgttggtc 26907279  T
Q  204 gttactttcaaagcatgcattcggaagt 231  Q
     ||||| |||||||||||||| ||||||    
T  26907280 tttactctcaaagcatgcattgggaagt 26907307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 20416126 - 20416201
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccat 385  Q
    |||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  20416126 aatcaccaaccatcaatctaacttctcctgaacaacaaacagcttctgaccaaccttctacatctcaaacaaccat 20416201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 28378288 - 28378358
Alignment:
Q  316 caactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||| ||| |||||| |||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||    
T  28378288 caaccatcaatctaacttctcctgaacaacaaacagcttctgaccaaccttctacatctcaaacaaccatc 28378358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 21170962 - 21171013
Alignment:
Q  334 ctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccat 385  Q
    |||||||||||||||||||| |||||||||| ||| |||||||| |||||||    
T  21170962 ctcctgaacatcaaacagcttctgaccaaccttctacatctcaatcaaccat 21171013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 24423899 - 24423938
Alignment:
Q  248 acaacaaactacctctgaacaaccccagcctaacccagaa 287  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  24423899 acaacaaactaccactgaacaaccccagcctaacacagaa 24423938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 20416074 - 20416112
Alignment:
Q  249 caacaaactacctctgaacaaccccagcctaacccagaa 287  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  20416074 caacaaactaccactgaacaaccccagcctaacacagaa 20416112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 259 - 386
Target Start/End: Original strand, 15205812 - 15205939
Alignment:
Q  259 cctctgaacaaccccagcctaacccagaaaaccaaacagaaacccttaaccaatcaccaactatcgatctaatttctcctgaacatcaaacagctgctga 358  Q
    ||||||| | |||||| |||||| ||||||| ||||||||||||||||||||||||||||||| | ||| || ||| | |||||| || |||||| ||||    
T  15205812 cctctgacctaccccaacctaacacagaaaatcaaacagaaacccttaaccaatcaccaactaacaatcaaacttcacgtgaacaacacacagcttctga 15205911  T
Q  359 ccaaccctcttcatctcaaacaaccatc 386  Q
    |||||| ||| |||||||||||||||||    
T  15205912 ccaaccttctacatctcaaacaaccatc 15205939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 17852812 - 17852569
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    |||| ||||| |||||||||||| ||| |||||||  | |||||||| | |||   |||||||  |||| |||||||||| ||| |||| || ||| | |    
T  17852812 ttgatggatagaagatttttgtttgtgttggacgacttatggaatgacaattacgttgattggagtgagctagtaactcccttgtttaagggaaaagctg 17852713  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
    |||| | ||| ||||| |||||||||| | ||||| ||||||||||||||| ||| ||||| ||||||| | |||| ||| | || ||||| || |||||    
T  17852712 gaagcaaggtcatcataacaacacgcctaaaaaaagttgcggaggttgcacgcacatttccaattcataaattagaacctatatccgatgaagattgttg 17852613  T
Q  201 gtcgttactttcaaagcatgcattcggaagtgaagtccgtggtc 244  Q
    ||| || || |||||||||||||| ||| |||||| || |||||    
T  17852612 gtctttgctctcaaagcatgcatttggaggtgaagaccttggtc 17852569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 19572810 - 19572730
Alignment:
Q  309 caatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatctct 389  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  19572810 caatcaccaaccatcaatctaacttctcctgaacatcaaacagcttctgaccaaccttctacatctcaaacaaccatctct 19572730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 16306941 - 16306865
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| || ||||||| ||| |||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  16306941 aatcaccaaccatagatctaacttcacctgaacatcaaacagcttctgaccaaccttctacatctcaaacaaccatc 16306865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 3374652 - 3374576
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| || |||||||  ||||||||||| |||||| || |||||||||| ||| |||||||||||||||||    
T  3374652 aatcaccaacaattgatctaacctctcctgaacaacaaacaacttctgaccaaccttctacatctcaaacaaccatc 3374576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 31679613 - 31679388
Alignment:
Q  10 aaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaagtaggg 109  Q
    |||||||||||||| ||| |||| ||  ||||||||||||| |||||||||||| || |  |||| ||||| || ||| | ||  || | ||||||||||    
T  31679613 aaaagatttttgtttgtgttggatgacatgtggaatgatagctataatgattggcatcatctagtcactcccttcattgatggagaatctggaagtaggg 31679514  T
Q  110 tgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtcgttact 209  Q
    |||| ||||||||||| ||| ||||| |||| ||| |  | || || ||||||||  ||| | |||| ||||| ||||||||||| || ||||| |||||    
T  31679513 tgattatcacaacacgtcaataaaaagttgccgagttcacccatacctttcctatctataaattagaacctctatcagatgatgattgctggtctttact 31679414  T
Q  210 ttcaaagcatgcattcggaagtgaag 235  Q
     |||||||||||||| ||||||||||    
T  31679413 ctcaaagcatgcatttggaagtgaag 31679388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 18924521 - 18924597
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| ||| |||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  18924521 aatcaccaaccatcaatctaacttctcctgaacatcaaacagcttctgaccaaccttctacatctcaaacaaccatc 18924597  T

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Target: scaffold0016 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 193736 - 193660
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  193736 aatcaccaaccatcaatctaacttctcctgaacaacaaacagcttctgaccaaccctctacatctcaaacaaccatc 193660  T

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Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 193788 - 193750
Alignment:
Q  249 caacaaactacctctgaacaaccccagcctaacccagaa 287  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  193788 caacaaactaccactgaacaaccccagcctaacacagaa 193750  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 34061159 - 34061235
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| ||| |||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  34061159 aatcaccaaccatcaatctaacttctcctgaacatcaaacagcttctgaccaaccttctacatctcaaacaaccatc 34061235  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 17448383 - 17448307
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| ||| |||||| |||||||||||||||||||||| |||||||||| |||  ||||||||||||||||    
T  17448383 aatcaccaaccatcaatctaacttctcctgaacatcaaacagcttctgaccaaccttctatatctcaaacaaccatc 17448307  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 20560914 - 20560990
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| || || ||||  ||| ||||||||||||||||  || ||||||| ||| ||||||||||| |||||    
T  20560914 aatcaccaacaattgacctaacctcttctgaacatcaaacagcctctaaccaaccttctacatctcaaacacccatc 20560990  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44957577 - 44957354
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    |||| ||||| |||||||||||| ||| |||||||  | |||||||| | |||||  ||||||  ||||||| |||| || ||||  ||| |   ||| |    
T  44957577 ttgatggatagaagatttttgtttgtgttggacgacatatggaatgacaattatatcgattggtctgagttaataacacccttgaccaaccgaggaactg 44957478  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
     ||| | ||| ||||| ||||||||  |||||||  |||| |||||||||||||| ||||| ||||||| | |||| ||||| || ||||| || |||||    
T  44957477 aaagcaaggtcatcataacaacacgtgaacaaaacgttgcagaggttgcacacacatttccgattcataaattagaacctctatctgatgaagattgttg 44957378  T
Q  201 gtcgttactttcaaagcatgcatt 224  Q
    ||| ||||| ||||||||||||||    
T  44957377 gtctttactctcaaagcatgcatt 44957354  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 18155542 - 18155466
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| ||| |||||| |||||||||||| |||||| || |||||||||| ||| |||||||||||||||||    
T  18155542 aatcaccaaccatcaatctaacttctcctgaacaacaaacaacttctgaccaaccttctacatctcaaacaaccatc 18155466  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11485218 - 11485441
Alignment:
Q  1 ttgagggataaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgg 100  Q
    |||| ||||| |||| ||||||| ||| |||||||  | ||||| || | ||||  ||||||||||  |||| ||||||| |||||||| ||  |||| |    
T  11485218 ttgaaggatagaagaattttgtttgtgttggacgacatatggaacgacaattatcttgattgggatcggttaataactcccttgattaatggagaaactg 11485317  T
Q  101 gaagtagggtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttg 200  Q
     ||| | ||||||||| ||||||||| || | ||| |||| ||||| |||  | | ||||||||||||| | |||| ||||| || ||||| || |||||    
T  11485318 taagcaaggtgatcataacaacacgcgaagagaaagttgcagaggtcgcatgcgcatttcctattcataaattagaacctctatctgatgaagattgttg 11485417  T
Q  201 gtcgttactttcaaagcatgcatt 224  Q
    ||| ||||| || |||||||||||    
T  11485418 gtctttactctcgaagcatgcatt 11485441  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 826099 - 826322
Alignment:
Q  9 taaaagatttttgttagtgctggacgatctgtggaatgatagttataatgattgggatgagttagtaactccattgattaacggcaaaacgggaagtagg 108  Q
    ||||||||||||||| ||| |||| |   | |||||||||||||||||||| ||| ||||  || |  |||||||| |||| || ||    |||||||||    
T  826099 taaaagatttttgtttgtgttggatggcttatggaatgatagttataatgactggcatgatctaattgctccattggttaatggaaattgtggaagtagg 826198  T
Q  109 gtgatcatcacaacacgccaacaaaaaattgcggaggttgcacacacgtttcctattcatatagtagatcctctgtcagatgatgactgttggtcgttac 208  Q
    |||||||||||||||||| |  ||| | |||| ||||||||||| |||| ||||||||||| | | || ||||| || || ||  | |||||||| ||||    
T  826199 gtgatcatcacaacacgctacgaaagagttgcagaggttgcacatacgtatcctattcataaattggaacctctatcggacgaacattgttggtctttac 826298  T
Q  209 tttcaaagcatgcattcggaagtg 232  Q
    | || ||| ||||||| |||||||    
T  826299 tctccaagtatgcatttggaagtg 826322  T

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Target: scaffold0201 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 381
Target Start/End: Complemental strand, 177 - 106
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaa 381  Q
    |||||||||| ||| |||||| |||||||||||| ||||||||| |||||||||| ||| ||||||||||||    
T  177 aatcaccaaccatcaatctaacttctcctgaacaacaaacagcttctgaccaaccttctacatctcaaacaa 106  T

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Target: scaffold0272 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 11764 - 11848
Alignment:
Q  302 ccttaaccaatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    ||||||||||||||||| |  | ||| || |||||||||||| || |||||| |||||||||| ||| ||||| |||||||||||    
T  11764 ccttaaccaatcaccaattcacaatcaaacttctcctgaacaacacacagcttctgaccaaccttctacatctgaaacaaccatc 11848  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 25213870 - 25213994
Alignment:
Q  261 tctgaacaaccccagcctaacccagaaaaccaaacagaaacccttaaccaatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgacc 360  Q
    ||||| ||||| || ||||||  |||| | ||||||||||  ||||||||||||||||||| | ||| || || ||||||||| || ||| |  || |||    
T  25213870 tctgatcaaccacaacctaacttagaacaacaaacagaaaatcttaaccaatcaccaactaacaatcaaacttttcctgaacaacatacaacctctaacc 25213969  T
Q  361 aaccctcttcatctcaaacaaccat 385  Q
    |||| || |||||||||| ||||||    
T  25213970 aaccttcctcatctcaaaaaaccat 25213994  T

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Target: scaffold0195 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 31634 - 31593
Alignment:
Q  277 ctaacccagaaaaccaaacagaaacccttaaccaatcaccaa 318  Q
    ||||||||||| | |||||||||| |||||||||||||||||    
T  31634 ctaacccagaacaacaaacagaaaaccttaaccaatcaccaa 31593  T

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Target: scaffold0485 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 601 - 677
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| || || ||||  ||| ||||||||||||||||  || ||||||| ||| ||||||||||| |||||    
T  601 aatcaccaacaattgacctaacctcttctgaacatcaaacagcctctaaccaaccttctacatctcaaacacccatc 677  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 340 - 264
Alignment:
Q  310 aatcaccaactatcgatctaatttctcctgaacatcaaacagctgctgaccaaccctcttcatctcaaacaaccatc 386  Q
    |||||||||| || || ||||  ||| ||||||||||||||||  || ||||||| ||| ||||||||||| |||||    
T  340 aatcaccaacaattgacctaacctcttctgaacatcaaacagcctctaaccaaccttctacatctcaaacacccatc 264  T

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