View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_high_16 (Length: 397)

Name: NF5759_high_16
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_high_16
NF5759_high_16
[»] chr3 (10 HSPs)
chr3 (12-381)||(48394267-48394624)
chr3 (138-212)||(39623991-39624065)
chr3 (139-212)||(41665430-41665503)
chr3 (139-211)||(52044101-52044173)
chr3 (139-212)||(31604696-31604769)
chr3 (139-213)||(27481707-27481781)
chr3 (139-212)||(47667107-47667180)
chr3 (140-208)||(39918624-39918692)
chr3 (140-217)||(48402436-48402513)
chr3 (144-196)||(48413988-48414040)
[»] chr7 (7 HSPs)
chr7 (135-224)||(39796747-39796836)
chr7 (138-212)||(23260675-23260749)
chr7 (140-211)||(38538910-38538981)
chr7 (140-212)||(28040454-28040526)
chr7 (140-212)||(33171123-33171195)
chr7 (140-212)||(44206097-44206169)
chr7 (139-212)||(31516560-31516633)
[»] chr1 (9 HSPs)
chr1 (140-217)||(5757793-5757870)
chr1 (139-211)||(3820305-3820377)
chr1 (139-212)||(5031737-5031810)
chr1 (139-212)||(17983259-17983332)
chr1 (140-212)||(20607549-20607621)
chr1 (140-217)||(6073242-6073319)
chr1 (139-211)||(41985251-41985323)
chr1 (140-208)||(20610824-20610892)
chr1 (139-211)||(41987968-41988040)
[»] chr8 (6 HSPs)
chr8 (138-212)||(9944021-9944095)
chr8 (139-212)||(18364532-18364605)
chr8 (139-212)||(35929245-35929318)
chr8 (139-211)||(27547174-27547246)
chr8 (139-212)||(43731583-43731656)
chr8 (140-212)||(43748330-43748402)
[»] chr5 (4 HSPs)
chr5 (139-212)||(8880743-8880816)
chr5 (140-212)||(32684983-32685055)
chr5 (140-212)||(20190346-20190418)
chr5 (139-212)||(20200373-20200446)
[»] chr2 (4 HSPs)
chr2 (135-212)||(36047048-36047125)
chr2 (135-212)||(36048279-36048356)
chr2 (139-212)||(27282662-27282735)
chr2 (140-213)||(44206818-44206891)
[»] chr4 (1 HSPs)
chr4 (140-222)||(24267487-24267569)
[»] scaffold0012 (1 HSPs)
scaffold0012 (150-208)||(184936-184994)
[»] chr6 (1 HSPs)
chr6 (162-194)||(30899737-30899769)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 48394267 - 48394624
Alignment:
Q  12 atgaaggattggtgattcttttgtcaaatcaaataaaataacgagagtcagaaaggatagaaaacaactatggtaaacgcgcttaagggaaaacatcaaa 111  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||         
T  48394267 atgaaggattggcgattcttttgtcaaataaaataaaataacgagagtcagaaaggaaagaaaacaactatggta-------ttaagggaaaaca----- 48394354  T
Q  112 acaccaaaaaagagagcgaacttaaata---cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 208  Q
       |||||||||||||||||| |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394355 ---ccaaaaaagagagcgaacataaaaaaaacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 48394451  T
Q  209 gactgatttattaatacaaactctcagatattatttaaacataataaactttcatgtgaactacttgcagataacacatttgtggcaaagatccgttgca 308  Q
    |||| ||||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394452 gactcatttgataatttaaactctcagatattatttaaacataataaactttcatgtgaactacttgcagataacacatttgtggcaaagatccgttgca 48394551  T
Q  309 atatctcacccatgtttattgtttgatttcataatgttacattaaacaaaaacagaatactccaataaatgaa 381  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48394552 ttatctcacccatgtttattgtttgatttcataatgttacattaaacaaaaacagagtactccaataaatgaa 48394624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 39623991 - 39624065
Alignment:
Q  138 tacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39623991 tacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 39624065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 41665430 - 41665503
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665430 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 41665503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 52044173 - 52044101
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044173 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 52044101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 31604769 - 31604696
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31604769 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 31604696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 27481707 - 27481781
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactg 213  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27481707 acgccgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaacgactg 27481781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 47667107 - 47667180
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  47667107 acgccgttgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaacgact 47667180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 39918624 - 39918692
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 208  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39918624 cgccgttgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaac 39918692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 48402436 - 48402513
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgattt 217  Q
    |||||||||| |||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  48402436 cgccgttgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaacttattt 48402513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 48413988 - 48414040
Alignment:
Q  144 gttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttacca 196  Q
    |||| |||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  48413988 gttgtcggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 39796747 - 39796836
Alignment:
Q  135 aaatacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgatttattaata 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  39796747 aaatacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgatgtgttaata 39796836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 23260749 - 23260675
Alignment:
Q  138 tacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260749 tacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 23260675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 38538981 - 38538910
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538981 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 38538910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 28040454 - 28040526
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28040454 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 28040526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 33171195 - 33171123
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171195 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 33171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 44206169 - 44206097
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206169 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 44206097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 31516633 - 31516560
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31516633 acgccgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 31516560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 5757870 - 5757793
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757870 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgattt 5757793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 3820305 - 3820377
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820305 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 3820377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 5031810 - 5031737
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031810 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 5031737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 17983332 - 17983259
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983332 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 17983259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 20607621 - 20607549
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607621 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 20607549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 6073242 - 6073319
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  6073242 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaacaactaattt 6073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 41985323 - 41985251
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 211  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985323 acgccgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 41985251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 20610892 - 20610824
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 208  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  20610892 cgccgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaac 20610824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 41988040 - 41987968
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 211  Q
    |||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41988040 acgccgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgac 41987968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 9944021 - 9944095
Alignment:
Q  138 tacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944021 tacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 9944095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 18364605 - 18364532
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364605 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 18364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 35929318 - 35929245
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929318 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 35929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 27547246 - 27547174
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547246 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgac 27547174  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 43731583 - 43731656
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43731583 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 43731656  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 43748330 - 43748402
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748330 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 43748402  T

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Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 8880816 - 8880743
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880816 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 8880743  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 32685055 - 32684983
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685055 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 32684983  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 20190346 - 20190418
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20190346 cgccgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaacgact 20190418  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 20200373 - 20200446
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||| || |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  20200373 acgccgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgact 20200446  T

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Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 36047125 - 36047048
Alignment:
Q  135 aaatacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36047125 aaatacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36047048  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 36048356 - 36048279
Alignment:
Q  135 aaatacgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36048356 aaatacgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 36048279  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 27282662 - 27282735
Alignment:
Q  139 acgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282662 acgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgact 27282735  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 44206891 - 44206818
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactg 213  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206891 cgccgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactg 44206818  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 24267487 - 24267569
Alignment:
Q  140 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactgatttattaa 222  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  24267487 cgccgttgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaacgactcatttgttaa 24267569  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 184994 - 184936
Alignment:
Q  150 ggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 208  Q
    |||||| |||||||| |||||||| ||||||  || |||||||||||||||||||||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaac 184936  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  162 cgggtcacccgcgtgacaggcgggaatacttac 194  Q
    |||||||||||||||||||||||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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