View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_high_19 (Length: 358)
Name: NF5759_high_19
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 45546051 - 45546390
Alignment:
| Q |
8 |
gatcaatccctatgcttgacattgcagcaagaagacagttgttgtgtctttgtggggtgatcttgcaactaacataggacaagagttacttgacatggct |
107 |
Q |
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| T |
45546051 |
gatcaatccctatgcttgacattgcagcaagaagacagttgttgtgtctttgtggggtgatcttgcaactaacataggacaagagttacttgacatggct |
45546150 |
T |
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| Q |
108 |
gataaatctccagtagttgcaatcaaatccctcaaggttggggattttcaaggtattgcaatgtgaaagctttgcttattattgtataacactgatg-ca |
206 |
Q |
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| T |
45546151 |
gataaatctccagtagttgcaatcaaatccctcaaggttggggattttcaaggtattgcaatgtgaaagctttgcttattattgtataacactgatgtaa |
45546250 |
T |
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| Q |
207 |
aaaaaggctcatatatctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctg |
306 |
Q |
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| T |
45546251 |
aaaaaggctcatatatctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctg |
45546350 |
T |
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| Q |
307 |
aagctcagaagctcagatgctggtataccaatgtctccta |
346 |
Q |
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| T |
45546351 |
aagctcagaagctcagatgctggtataccaatgtctccta |
45546390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 45550632 - 45550937
Alignment:
| Q |
17 |
ctatgcttgacattgcagcaagaagacagttgttgtgtctttgtggggtgatcttgcaactaacataggacaagagttacttgacatggctgataaatct |
116 |
Q |
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| T |
45550632 |
ctatgcttgacattgcagcaagaagacagttgttgtgactttgtggggtgatcttgcaactaacattggaaatgagttactggaaattgctgataaatcc |
45550731 |
T |
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| Q |
117 |
ccagtagttgcaatcaaatccctcaaggttggggattttcaaggtattgcaatgtgaaagctttgcttattattgtataacactgatgcaaaaaaggctc |
216 |
Q |
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| T |
45550732 |
ccagtagttgcaatcaaatctgtcaaggtttgggactttggaggtattgcaaagtgaaagttttgccgattattgtctagcactgattcaaacaaggctc |
45550831 |
T |
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| Q |
217 |
atatatctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctgaagctcagaa |
316 |
Q |
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| T |
45550832 |
at-tatctcactgttgaatgtcttctgtttcaggtgtttctctgtcagctatgcacagaagtttagttatgatcaatccagatgtacccgaggctcggaa |
45550930 |
T |
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| Q |
317 |
gctcaga |
323 |
Q |
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| T |
45550931 |
gctcaga |
45550937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 36871777 - 36871695
Alignment:
| Q |
90 |
gagttacttgacatggctgataaatctccagtagttgcaatcaaatccctcaaggttggggattttcaaggtattgcaatgtg |
172 |
Q |
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| T |
36871777 |
gagttgctggacattgctggtaaatccctagtagctgtaatcaaatacctcaaggttggggactttcaaggtattgcaatgtg |
36871695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 36871148 - 36871054
Alignment:
| Q |
221 |
atctcattgctgaatgttttctgtgtcaggtatttctttgtcagctataag----cagaagtttagttctggtcaatccagaagtacctgaagct |
311 |
Q |
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| T |
36871148 |
atctcattgttgaatatgttctttttcaggtgtttctttgacagctattaattaacacaagtttagttccgatcaatccagaagtacctgaagct |
36871054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 42780854 - 42780924
Alignment:
| Q |
255 |
tctttgtcagctataagcagaagtttagttctggtcaatccagaagtacctgaagctcagaagctcagatg |
325 |
Q |
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| T |
42780854 |
tctttgtcaactatatgcagaagtttagttctgatcaatccagtagtacctgaatgttagaagctaagatg |
42780924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 42780715 - 42780760
Alignment:
| Q |
36 |
aagaagacagttgttgtgtctttgtggggtgatcttgcaactaaca |
81 |
Q |
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| T |
42780715 |
aagaagacagttgttgtatctttctggggtgatcttgcaactaaca |
42780760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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