View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_high_21 (Length: 351)

Name: NF5759_high_21
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_high_21
NF5759_high_21
[»] chr1 (1 HSPs)
chr1 (10-333)||(17594381-17594704)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 17594381 - 17594704
Alignment:
Q  10 acatcatcaacggctaccaatctctcctttgaccagctcacttcttgtgatccgtctgatgggagggaggatccagcacagtaacgtatgcatcccacct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17594381 acatcatcaacggctaccaatctctcctttgaccagctcacttcttgtgatccgtctgatgggagggagaatccagcacagtaacgtatgcatcccacct 17594480  T
Q  110 caccgttggatccgtggataccgtaacatgtggcgaggttagggaagcgtttgtggagattgaaaaagtctttgataagtggccatgcttgttgttttgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17594481 caccgttggatccgtggataccgtaacatgtggcgaggttagggaagcgtttgtggagattgaaaaagtctttgatgagtggccatgcttgttgttttgt 17594580  T
Q  210 ggtgtttttgagtttggttgaaactttggcttcccatctttgaataatgttttgttccatttttgtgtgcaaaggatacaaagctgaatgatgagattcc 309  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17594581 ggtgtttttcagtttggttgaaactttggcttcccatctttgaataatgttttgttccatttttgtgtgcaaaggatacaaagctgaatgatgagattcc 17594680  T
Q  310 actcaatttcaccctccaccacta 333  Q
    ||||||||||||||||||||||||    
T  17594681 actcaatttcaccctccaccacta 17594704  T

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