View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_high_22 (Length: 319)
Name: NF5759_high_22
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 95 - 310
Target Start/End: Complemental strand, 10360123 - 10359908
Alignment:
| Q |
95 |
cgaccaaattgcctctttcttttgcaaggtcttcaacaaaagttacagcagcaaggaaaacgttattgcttgaaatggaagactcaaatccatacatgta |
194 |
Q |
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| T |
10360123 |
cgaccaaattgcctctttcttttgcaaggtcttcaacaaaagttacagcagcaaggaaaacgttattgcttgaaatggaagactcaaatccatacatgta |
10360024 |
T |
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| Q |
195 |
ttccatcagtttggtctaataagtgcaacgtaattatagcctaaatttcagtggtgcaccnnnnnnnttaattgatcctacttttccaattattttggat |
294 |
Q |
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| T |
10360023 |
ttccatcagtttggtctaataagtgcaacgtaattatagcctaaatttcagtggtacaccaaaaaaattaattgatcatacttttccaatttttttggat |
10359924 |
T |
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| Q |
295 |
accccaccatttcatc |
310 |
Q |
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| T |
10359923 |
accccaccatttcatc |
10359908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 10360143 - 10360113
Alignment:
| Q |
19 |
atggatactatttcttgttgcgaccaaattg |
49 |
Q |
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| T |
10360143 |
atggatactatttcttgttgcgaccaaattg |
10360113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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