View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5759_high_26 (Length: 300)
Name: NF5759_high_26
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_high_26 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 13161131 - 13160864
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161131 |
tcaagattattgctttcgccagctcttgaggtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
13161032 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161031 |
tcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
13160932 |
T |
|
| Q |
217 |
actactattggtagtgccactgtcagatatcaacatatcaacgagtctctccttatcatccttcctac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13160931 |
actactattggtagtgccactgtcagatatcaacatactaacgagtctctccttatcatccttcctac |
13160864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 13171182 - 13170917
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13171182 |
tcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
13171083 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13171082 |
tcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
13170983 |
T |
|
| Q |
217 |
actactattggtagtgccactgtcagatatcaacatatcaacgagtctctccttatcatccttcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
13170982 |
actactattggtagtgccactgtcagatatcaacatactaatgagtctctctttatcatccttcct |
13170917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 13289816 - 13289549
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13289816 |
tcaagattattgctttcaccacctcttgaagtgacagattcatgaatggttttagttactctcaaaatatcgaaatcctccgatacacaaacccagactt |
13289717 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13289716 |
tcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcgaccacaccaat |
13289617 |
T |
|
| Q |
217 |
actactattggtagtgccactgtcagatatcaacatatcaacgagtctctccttatcatccttcctac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
13289616 |
actactattggtagtgccactgtcagatatcaacatactaatgagtctctctttatcatccttcctac |
13289549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 13333055 - 13332788
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13333055 |
tcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
13332956 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13332955 |
tcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaac |
13332856 |
T |
|
| Q |
217 |
actactattggtagtgccactgtcagatatcaacatatcaacgagtctctccttatcatccttcctac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
13332855 |
actactattggtagtgccactgtcagatatcaacatactaatgagtctctctttatcatccttcctac |
13332788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 13344240 - 13343973
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13344240 |
tcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagtgactctcagaatatcgaaatcctccgatacacaaacccagactt |
13344141 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13344140 |
tcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
13344041 |
T |
|
| Q |
217 |
actactattggtagtgccactgtcagatatcaacatatcaacgagtctctccttatcatccttcctac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
13344040 |
actactattggtagtgccactgtcagatatcaacatactaatgagtctctctttatcatccttcctac |
13343973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 8861437 - 8861241
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| | | |||| ||||||||||||||| ||| ||||||||||| | |||||| |||||||| ||||||||| |||| ||| |
|
|
| T |
8861437 |
tcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacagttgaaatatcaaaatcctctgatacacaagcccatgctt |
8861338 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| |||||||| || || ||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
8861337 |
tgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacacc |
8861241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 11130944 - 11131140
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| | | | || ||||||||||||||| | | |||||||||||||| | |||||| |||||||||||||||||| |||| ||| |
|
|
| T |
11130944 |
tcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagcccatgctt |
11131043 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| |||||||| || || ||||||| || |||||| ||| || ||| ||||| || ||||| || ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
11131044 |
tgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaacaacacc |
11131140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 11148772 - 11148968
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| | | | || ||||||||||||||| | | |||||||||||||| | |||||| |||||||||||||||||| |||| ||| |
|
|
| T |
11148772 |
tcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaagcccatgctt |
11148871 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| |||||||| || || ||||||| || |||||| ||| || ||| ||||| || ||||| || ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
11148872 |
tgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaacaacacc |
11148968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 10088916 - 10088745
Alignment:
| Q |
42 |
tcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttc |
141 |
Q |
| |
|
||||||||||||||||| | | | || |||||||||| |||||| |||||||| || ||||||||||| | |||| ||||||||||| |||||||| |
|
|
| T |
10088916 |
tcgaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttc |
10088817 |
T |
|
| Q |
142 |
tttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
||||||||| |||| |||||||||||| || ||||| || | ||| ||||| || ||||||||||| ||||| |
|
|
| T |
10088816 |
tttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacc |
10088745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 10195799 - 10195628
Alignment:
| Q |
42 |
tcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttc |
141 |
Q |
| |
|
||||||||||||||||| | | | || |||||||||| |||||| |||||||| || ||||||||||| | |||| ||||||||||| |||||||| |
|
|
| T |
10195799 |
tcgaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttc |
10195700 |
T |
|
| Q |
142 |
tttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
||||||||| |||| |||||||||||| || ||||| || | ||| ||||| || ||||||||||| ||||| |
|
|
| T |
10195699 |
tttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacc |
10195628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10032100 - 10031958
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| ||||| | |||| ||||||||| | ||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
10032100 |
gttactctcataatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaaggg |
10032001 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10032000 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
10031958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10127025 - 10126883
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||||||||| | |||| ||||||||| | ||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
10127025 |
gttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaaggg |
10126926 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10126925 |
tagtttttcccaaacctcccatgcccaaaattgcaacaacacc |
10126883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10663623 - 10663481
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||||||||| | |||| ||||||||| | ||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
10663623 |
gttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaaggg |
10663524 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10663523 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
10663481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 10889454 - 10889261
Alignment:
| Q |
20 |
agattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactttca |
119 |
Q |
| |
|
||||||||| |||| | | |||| ||||| ||||||||| ||| ||||||||||| | | |||||| |||||||| ||||||||| |||| |||| | |
|
|
| T |
10889454 |
agattattgttttcccaagctcttgaagtcacagattcaagaagagttttagttacagttaaaatatcaaaatcctcagatacacaagcccatgctttga |
10889355 |
T |
|
| Q |
120 |
gatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
||||||| || || ||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
10889354 |
gatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaacaacacc |
10889261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 10363770 - 10363912
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||||||||| | |||| ||||||||| | ||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
10363770 |
gttactctcataatatcaaaatcctcagagacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaaggg |
10363869 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| || ||||||||||| ||||| |
|
|
| T |
10363870 |
tagtttttcctaaacctcccatgcctaaaattgcaacaacacc |
10363912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10580698 - 10580556
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||||||||| | |||| |||||||| | ||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
10580698 |
gttactctcataatatcaaaatcctcagacacacaaacccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaaggg |
10580599 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10580598 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
10580556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 11159935 - 11160125
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| | | |||| ||||||||||||||| ||| ||||||||||| | |||||| |||||||| ||||||||| |||| ||| |
|
|
| T |
11159935 |
tcaagattattggtttcccaagctcttgaagtgacagattcaagaagagttttagttacagataaaatatcaaaatcctcagatacacaagcccatgctt |
11160034 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaac |
207 |
Q |
| |
|
| | ||||||||| || ||||||| || || ||| |||| |||||| ||||| || ||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
11160035 |
tgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaac |
11160125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 10434016 - 10434158
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||| ||| |||||| ||||||| || |||||| ||||| | |||| ||||||||||| ||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
10434016 |
gttactttcaaaatatcaaaatcctgagacacacaagcccaggccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaaggg |
10434115 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| || ||||||||||| ||||| |
|
|
| T |
10434116 |
tagtttttcctaaacctcccatgcctaaaattgcaacaacacc |
10434158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10527434 - 10527292
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| || |||||||||||| |||||| |||||||| | || ||||||||||||| | ||| | || |||||| |||| |||||| ||||| | |
|
|
| T |
10527434 |
gttactctcacaacatcgaaatcctctgatacataaacccaggccttgagatcaaaatggtgttcaaccttttcatcattgtaaacaagttgtgcaaggg |
10527335 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || ||||| ||||||||||| |||||||| ||||| |
|
|
| T |
10527334 |
ttgttttaccgacacctcccatacccaagattgcaacaacacc |
10527292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 9838958 - 9838816
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | ||| ||||||||| | |||||||||| |||||| |||| |||||||||||| | |
|
|
| T |
9838958 |
gttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaaggg |
9838859 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
9838858 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
9838816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 9849836 - 9849694
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | ||| ||||||||| | |||||||||| |||||| |||| |||||||||||| | |
|
|
| T |
9849836 |
gttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaaggg |
9849737 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
9849736 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
9849694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10184339 - 10184197
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | ||| ||||||||| | ||||||||||||||||| |||| |||||| ||||| | |
|
|
| T |
10184339 |
gttactctcataatatcaaaatcctcggacacacaagcccacgccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaaggg |
10184240 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10184239 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
10184197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10260795 - 10260653
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | |||| |||||||| | ||||||||||||||||| |||| |||||| ||||| | |
|
|
| T |
10260795 |
gttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaaggg |
10260696 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10260695 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
10260653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 10375817 - 10375959
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | |||| ||||||||| | ||||||| || |||||| |||| |||||| ||||| | |
|
|
| T |
10375817 |
gttactctcaaaatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaaggg |
10375916 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10375917 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
10375959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 11781989 - 11782117
Alignment:
| Q |
85 |
atcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaaca |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| | | ||||| |||||| |||| ||| || ||||| || ||||| || || |
|
|
| T |
11781989 |
atcgaaatcctccgatacacaaacccagactttgaaatcaaaatgttgttcaactttcacatcattgtaaacaagctgtgcaagggtcgttttaccgacg |
11782088 |
T |
|
| Q |
185 |
ccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
|| ||||||||||||||||| || ||||| |
|
|
| T |
11782089 |
cctcccatacccaaaattgcgacaacacc |
11782117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 10077366 - 10077224
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||| |||| | | || ||||||||||| |||||| | |||||| |||| |||||||||||| | |
|
|
| T |
10077366 |
gttactctcataatatcaaaatcctcagacacacaagcccatgcctgcaaatcaaaatggtatcgaactttataatcattgtaaacaagttgggcaaggg |
10077267 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
10077266 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
10077224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 11769331 - 11769189
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || || ||| |||| | |||| |||||||| | ||||||||||||||||| || | |||||| ||||| | |
|
|
| T |
11769331 |
gttactctcataatatcaaaatcctcagacacgcaagcccatgccttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaaggg |
11769232 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| |
|
|
| T |
11769231 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacc |
11769189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 145857 - 146124
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
145857 |
tcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
145956 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
145957 |
tcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
146056 |
T |
|
| Q |
217 |
actactattggtagtgccactgtcagatatcaacatatcaacgagtctctccttatcatccttcctac |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
146057 |
actactattggtagtgccactgtcagatatcaacatactaatgagtctctctttatcatccttcctac |
146124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 135806 - 136071
Alignment:
| Q |
17 |
tcaagattattgctttcgccacctctcgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
116 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135806 |
tcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagactt |
135905 |
T |
|
| Q |
117 |
tcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135906 |
tcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgcaaccacaccaat |
136005 |
T |
|
| Q |
217 |
actactattggtagtgccactgtcagatatcaacatatcaacgagtctctccttatcatccttcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
136006 |
actactattggtagtgccactgtcagatatcaacatactaatgagtctctctttatcatccttcct |
136071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 254
Target Start/End: Complemental strand, 26906994 - 26906811
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||||||||| | |||| ||||||||| ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
26906994 |
gttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaaggg |
26906895 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacaccaatactactattggtagtgccactgtcagatatcaacatat |
254 |
Q |
| |
|
| ||||| || | ||| ||||| |||||||||||||| ||||| ||| || ||| ||| ||| | || || |||| |||||||| |
|
|
| T |
26906894 |
tagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctctgatagcaacatat |
26906811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 11485100 - 11484972
Alignment:
| Q |
85 |
atcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgccaaca |
184 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||| | | ||||| || ||| || |||| |||||| ||||| || ||||| || || |
|
|
| T |
11485100 |
atcgaaatcctccgatacacaaacccatgctttgagatcaaaatgctgttcaactttttcatcgttgtaaacaagttgtgcaagggtcgttttaccgacg |
11485001 |
T |
|
| Q |
185 |
ccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
|| |||||| ||||||||||||| ||||| |
|
|
| T |
11485000 |
cctcccataaccaaaattgcaacaacacc |
11484972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 17852916 - 17853058
Alignment:
| Q |
71 |
gttactctcagaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagag |
170 |
Q |
| |
|
|||||||||| || ||| ||||| || ||||||||||||||| |||| ||||||||||| | | ||| | || |||||| |||| ||| || ||||| | |
|
|
| T |
17852916 |
gttactctcacaacatcaaaatcttctgatacacaaacccaggctttgagatcaaaatgatgttcaaccttttcatcattgtaaacaagctgtgcaaggg |
17853015 |
T |
|
| Q |
171 |
tggttttgccaacaccgcccatacccaaaattgcaaccacacc |
213 |
Q |
| |
|
| ||||| || ||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
17853016 |
tcgttttaccgacacctcccatccccaatattgcaacaacacc |
17853058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 825994 - 825890
Alignment:
| Q |
82 |
aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcatgaacttctttatcattataaagaagttgggcaagagtggttttgcca |
181 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||||||| ||||||||| |||| ||||| |||||||| |||| |||| | ||||| || | ||| ||| |
|
|
| T |
825994 |
aatatcaaaatcctcggtgacacaaacccagactttcaaatcaaaatgctcatcaactttcttatcattgtaaacaagtcgagcaagtgtcgatttacca |
825895 |
T |
|
| Q |
182 |
acacc |
186 |
Q |
| |
|
||||| |
|
|
| T |
825894 |
acacc |
825890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University