View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_high_29 (Length: 276)

Name: NF5759_high_29
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_high_29
NF5759_high_29
[»] chr4 (3 HSPs)
chr4 (1-258)||(4670337-4670598)
chr4 (53-144)||(29808110-29808201)
chr4 (110-171)||(46767279-46767340)
[»] chr3 (2 HSPs)
chr3 (35-149)||(48601330-48601444)
chr3 (35-177)||(40748904-40749042)
[»] scaffold0041 (1 HSPs)
scaffold0041 (109-177)||(83897-83965)
[»] chr7 (1 HSPs)
chr7 (109-177)||(40882318-40882386)
[»] scaffold0127 (1 HSPs)
scaffold0127 (35-178)||(14525-14671)
[»] chr8 (1 HSPs)
chr8 (48-171)||(34492606-34492729)
[»] chr2 (1 HSPs)
chr2 (35-90)||(18060909-18060964)
[»] scaffold0087 (3 HSPs)
scaffold0087 (35-92)||(2341-2398)
scaffold0087 (35-92)||(7090-7147)
scaffold0087 (35-92)||(17230-17287)
[»] chr5 (1 HSPs)
chr5 (103-147)||(27095039-27095083)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4670337 - 4670598
Alignment:
Q  1 taaacatgttaatcaacacaagactccacaatgttctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccccatagctt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||    
T  4670337 taaacatgttaatcaacacaagactccacaatgttctctcctgttcgttagtgtatatttgtaatgagggtgtaatattagggctaatcccccatagttt 4670436  T
Q  101 cgtttatacttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctcgttcgac-----nnnnnnngactccaaca 195  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||            |||||| |||    
T  4670437 cgtttatatttgatttgtggttttagccgttttattggttataccgcctttatatattggaatctcatctcgttcgacaaaaaaaaaaaagactcc-aca 4670535  T
Q  196 atgttagagattgcatcactcacaatatctttagactgctctaattcataaccatgtcataat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4670536 atgttagagattgcatcactcacaatatctttagactgctctaattcataaccatgtcataat 4670598  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 29808201 - 29808110
Alignment:
Q  53 gtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttgttggttatac 144  Q
    ||||||||||| ||||||||||| || |||||| ||||| |  |||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  29808201 gtttatttgtattgagggtgtaaaatatgggcttatccctctgagcttcgtttgtacttgatttgtggttttaaccgttttgtcggttatac 29808110  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 46767340 - 46767279
Alignment:
Q  110 ttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctc 171  Q
    |||||||||||||||||||||||| | ||||||||| ||||||| |||| ||||||||||||    
T  46767340 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctc 46767279  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 48601444 - 48601330
Alignment:
Q  35 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttg 134  Q
    ||||||||| || ||||||||| ||||||||||  || |||||||||| |||||||| || |||||| ||| || |||||||||||||||| |||||||     
T  48601444 tctctcttgcgcgttagtgtttgtttgtaatgaaagtttaatatttggactaatccctcaaagcttcatttgtatttgatttgtggttttaaccgtttta 48601345  T
Q  135 ttggttataccgcct 149  Q
    |||||||||||||||    
T  48601344 ttggttataccgcct 48601330  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 40748904 - 40749042
Alignment:
Q  35 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttg 134  Q
    ||||||||| || ||||||||||||||||||||| ||||| ||||||| |||||  ||||||||||  ||| ||||||||||| ||||||| || |||      
T  40748904 tctctcttgcgcgttagtgtttatttgtaatgagagtgtattatttggactaat-tcccatagctttatttgtacttgatttgcggttttaaccttttca 40749002  T
Q  135 ttggttataccgcctttatatattggaatctcatctcgttcga 177  Q
    ||||||||||||| |||   ||||||||||||||||| |||||    
T  40749003 ttggttataccgcattt---tattggaatctcatctctttcga 40749042  T

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Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 83965 - 83897
Alignment:
Q  109 cttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctcgttcga 177  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  83965 cttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 83897  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 40882318 - 40882386
Alignment:
Q  109 cttgatttgtggttttagccgttttgttggttataccgcctttatatattggaatctcatctcgttcga 177  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  40882318 cttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 40882386  T

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Target: scaffold0127 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 14525 - 14671
Alignment:
Q  35 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcc---cccatagcttcgtttatacttgatttgtggttttagccgtt 131  Q
    ||||||||| || ||||||||||||| || | ||||||||||||||||| ||||     | || | |||| ||| | |||||||||||||||||||||||    
T  14525 tctctcttgcgcgttagtgtttatttatattaagggtgtaatatttgggttaattatatctcaaaacttcatttgttcttgatttgtggttttagccgtt 14624  T
Q  132 ttgttggttataccgcctttatatattggaatctcatctcgttcgac 178  Q
     ||| | |||||||| |||||| |||| ||||||||||| |||||||    
T  14625 ctgtcgattataccgtctttatttattagaatctcatcttgttcgac 14671  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 34492729 - 34492606
Alignment:
Q  48 ttagtgtttatttgtaatgagggtgtaatatttgggctaatcccccatagcttcgtttatacttgatttgtggttttagccgttttgttggttataccgc 147  Q
    |||| ||||||||||| ||||||||||| || | |||||||||| || | |||| ||| | |||  |||||||||||| | |||||||  |||||||| |    
T  34492729 ttagggtttatttgtattgagggtgtaaaatataggctaatccctcaaaacttcatttgttcttattttgtggttttaacagttttgtaagttataccac 34492630  T
Q  148 ctttatatattggaatctcatctc 171  Q
    |||| | |||||||||||||||||    
T  34492629 ctttttctattggaatctcatctc 34492606  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 18060909 - 18060964
Alignment:
Q  35 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcc 90  Q
    |||||||||||| |||||||||||||||||| || ||||| |||||||||||||||    
T  18060909 tctctcttgtgcgttagtgtttatttgtaataagagtgtattatttgggctaatcc 18060964  T

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Target: scaffold0087 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 2398 - 2341
Alignment:
Q  35 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccc 92  Q
    ||||||||| || ||||||||||| |||| | ||||||||||||||||| ||||||||    
T  2398 tctctcttgcgcgttagtgtttatatgtattaagggtgtaatatttgggttaatcccc 2341  T

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Target: scaffold0087; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 7147 - 7090
Alignment:
Q  35 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccc 92  Q
    ||||||||| || ||||||||||| |||| | ||||||||||||||||| ||||||||    
T  7147 tctctcttgcgcgttagtgtttatatgtattaagggtgtaatatttgggttaatcccc 7090  T

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Target: scaffold0087; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 17287 - 17230
Alignment:
Q  35 tctctcttgtgctttagtgtttatttgtaatgagggtgtaatatttgggctaatcccc 92  Q
    ||||||||| || ||||||||||| |||| | |||||||||||| |||| ||||||||    
T  17287 tctctcttgcgcgttagtgtttatatgtattaagggtgtaatatgtgggttaatcccc 17230  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 27095083 - 27095039
Alignment:
Q  103 tttatacttgatttgtggttttagccgttttgttggttataccgc 147  Q
    ||||||||||| ||||||||||| ||| ||| |||||||||||||    
T  27095083 tttatacttgacttgtggttttaaccgattttttggttataccgc 27095039  T

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