View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_high_34 (Length: 248)

Name: NF5759_high_34
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_high_34
NF5759_high_34
[»] chr5 (10 HSPs)
chr5 (11-248)||(6731495-6731732)
chr5 (19-247)||(6716370-6716598)
chr5 (19-155)||(6773811-6773947)
chr5 (22-102)||(6738915-6738995)
chr5 (22-102)||(6748967-6749047)
chr5 (19-106)||(6724287-6724374)
chr5 (19-170)||(7096876-7097027)
chr5 (12-50)||(6761812-6761850)
chr5 (82-238)||(6761852-6762002)
chr5 (127-175)||(6749072-6749120)
[»] chr8 (2 HSPs)
chr8 (63-105)||(33912557-33912599)
chr8 (147-175)||(33974374-33974402)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 6731495 - 6731732
Alignment:
Q  11 aatataagatcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6731495 aatataagatcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagattaataatattggatatat 6731594  T
Q  111 actaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6731595 actaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtaca 6731694  T
Q  211 atgcacttcaaattgggagttcttgagacggcaacaac 248  Q
    ||| ||||||||||||||||||||||||||| ||||||    
T  6731695 atgtacttcaaattgggagttcttgagacggtaacaac 6731732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 6716370 - 6716598
Alignment:
Q  19 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 118  Q
    |||||||||||||||| ||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | | || ||    
T  6716370 atcttataatctggcatttggaatttgaacctctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatttctcccaactt 6716469  T
Q  119 tccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcactt 218  Q
     ||  |  |||||||||||   |||||| || ||||||||| ||||||||||||||| || ||| |||||| |  | || || ||||||||||||  |||    
T  6716470 gcctcagcagaagtcccaaccggttaatggcgtcttcatcagtttgaaactcaggcacccgaagcccacagtgttcgaatagcgtttgtacaatgttctt 6716569  T
Q  219 caaattgggagttcttgagacggcaacaa 247  Q
    ||| ||||||||| ||||||||| |||||    
T  6716570 caagttgggagtttttgagacggtaacaa 6716598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 6773811 - 6773947
Alignment:
Q  19 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 118  Q
    ||||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  6773811 atcttataatctggcaatttgaatttgaacttctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatatctaccaactt 6773910  T
Q  119 tccaaaatagaagtcccaattcgttaattgcatcttc 155  Q
     ||  |  |||| |||||||  |||||||||||||||    
T  6773911 gcctcagcagaattcccaatcggttaattgcatcttc 6773947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 6738915 - 6738995
Alignment:
Q  22 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 102  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738915 ttataatctggcaatttgaatgtgaacttctcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 6738995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 6748967 - 6749047
Alignment:
Q  22 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 102  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6748967 ttataatctggcaattggaatttgaacttctcaacaaggttttctgagccaggccaaacatcatccaagactaataatatt 6749047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 6724287 - 6724374
Alignment:
Q  19 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 106  Q
    |||||||||||||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724287 atcttataatctggcaatttaaatttgaacttctccacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 6724374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 7097027 - 7096876
Alignment:
Q  19 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 118  Q
    ||||||||||||| || ||||||| |||| || |||||||||| |||||||  |||||||||||||||||||||||||| |||||||| | ||| || ||    
T  7097027 atcttataatctgacatttggaatttgaaattctcaacaaggccttctgagttaggccaaacatcatccaagactaatagtattggatttctaccaactt 7096928  T
Q  119 tccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactc 170  Q
     ||  || || |||||||||  ||||||||||||||||||  ||||||||||    
T  7096927 gcctcaacagtagtcccaatcggttaattgcatcttcatcggtttgaaactc 7096876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 6761812 - 6761850
Alignment:
Q  12 atataagatcttataatctggcaattggaatctgaactt 50  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6761812 atataagatcttataatctggcaattggaatttgaactt 6761850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 238
Target Start/End: Original strand, 6761852 - 6762002
Alignment:
Q  82 tcatccaagactaataatattggatatatactaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaa 181  Q
    |||||||||| ||||||||||||| ||   | ||||| || ||||||||||||||||  || |||||||||||| |   |||||||||| |||| |||||    
T  6761852 tcatccaagagtaataatattggaaat---ccaatttccctaaatagaagtcccaatatgtcaattgcatcttcgt---tttgaaactccggcacccaaa 6761945  T
Q  182 gtccacagcgag-caaacagtgtttgtacaatgcacttcaaattgggagttcttgaga 238  Q
     ||||||  ||| |||  | ||| |||||||||  |||||| ||||||||||||||||    
T  6761946 atccaca-tgagtcaattattgtctgtacaatgttcttcaagttgggagttcttgaga 6762002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 6749072 - 6749120
Alignment:
Q  127 agaagtcccaattcgttaattgcatcttcatcactttgaaactcaggca 175  Q
    ||| ||||||||| ||||||||||||||| | ||||||||| |||||||    
T  6749072 agatgtcccaattggttaattgcatcttcgttactttgaaaatcaggca 6749120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 33912599 - 33912557
Alignment:
Q  63 ttctgagccaggccaaacatcatccaagactaataatattgga 105  Q
    ||||||||| |||||||||||||||| |||||| |||||||||    
T  33912599 ttctgagccgggccaaacatcatccaggactaacaatattgga 33912557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 33974402 - 33974374
Alignment:
Q  147 tgcatcttcatcactttgaaactcaggca 175  Q
    |||||||||||||||||||||||||||||    
T  33974402 tgcatcttcatcactttgaaactcaggca 33974374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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