View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_high_9 (Length: 411)
Name: NF5759_high_9
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 41977240 - 41977627
Alignment:
| Q |
7 |
gtgagatgaattcaaaggaatcatatttttaattgcgtgaatctaagtttaaacagttacgcaaaatgcgagtcgtttttatctttatgcaaatattctg |
106 |
Q |
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| T |
41977240 |
gtgaaatgaattcaaaggaatcatatttttaattgcgtgaatctaagtttaaacagttacgcaaaatacgagtcgtttttatctttatgcaaatattctg |
41977339 |
T |
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| Q |
107 |
tcttacgaacaactaattgagtgcgcgttgatcatgataaccctgaaaaatctgtaaccgtcttcctttccgttcaatttatctatgcgtgttttatttt |
206 |
Q |
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| T |
41977340 |
tcttacgaacaactaattgagtgcgcgtttatcatgataaccctgaaaaatctgtaaccgtcttcctttccgatcaatttatctatgcgtgttttatttt |
41977439 |
T |
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| Q |
207 |
gaacttgatttatacgttatcatgaattatgttccttgttctatacttatttgtttatttcaccctataaattgcttagaaattttcaagtttcagcata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41977440 |
gaacttgatttatacgttatcatgaattatgttccttgttatatacttatttgtttatttcaccctataaattgcttagaaattttcaagtttcagcata |
41977539 |
T |
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| Q |
307 |
gcagaaaaaatatatccatcatcaatatttctctattgctttgaaaatctaaagttaagtgaaagttttttatacatatgcttgtaag |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41977540 |
gcagaaaaaatatatccatcatcaatatttctctattgctttgaaaatctaaagttaagtgaaagttttttatacatatgcttgtaag |
41977627 |
T |
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