View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_low_1 (Length: 811)

Name: NF5759_low_1
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_low_1
NF5759_low_1
[»] chr4 (16 HSPs)
chr4 (507-786)||(10484088-10484369)
chr4 (453-696)||(10470294-10470537)
chr4 (299-429)||(10484415-10484545)
chr4 (9-105)||(10474367-10474463)
chr4 (700-786)||(10470162-10470250)
chr4 (9-105)||(10463425-10463521)
chr4 (509-675)||(38224312-38224478)
chr4 (699-774)||(5204035-5204110)
chr4 (464-696)||(5204153-5204386)
chr4 (126-255)||(10463247-10463380)
chr4 (495-687)||(51303192-51303384)
chr4 (520-621)||(38945514-38945615)
chr4 (707-760)||(40789097-40789150)
chr4 (15-65)||(8437955-8438005)
chr4 (15-65)||(8444260-8444310)
chr4 (15-65)||(10481371-10481421)
[»] chr2 (4 HSPs)
chr2 (552-696)||(35061121-35061265)
chr2 (700-772)||(35061005-35061077)
chr2 (703-774)||(43111769-43111840)
chr2 (453-541)||(35061487-35061576)
[»] chr1 (1 HSPs)
chr1 (546-621)||(1929131-1929206)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 507 - 786
Target Start/End: Complemental strand, 10484369 - 10484088
Alignment:
Q  507 tgacaggtacaagagatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggg 606  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||  ||||||||||||    
T  10484369 tgacaggtacaagagatggaacaataataattttacagatgttattcttaatgtggatggtagctatcatggtactcctgttagaaccgagtttggtggg 10484270  T
Q  607 gtcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgagctttatgctgtgaacttgc 706  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10484269 gtcttgcgtaatgacacaggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgagctttatgctgtgaacttgc 10484170  T
Q  707 ttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatgt--ttctcatccaa 786  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  10484169 ttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctctgttgttctcatccaa 10484088  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 453 - 696
Target Start/End: Complemental strand, 10470537 - 10470294
Alignment:
Q  453 ttctattgagtgcattgtaataaacttttctactcctactcctgctgttacgagtgacaggtacaagagatggaacaataataattttaaagatgttatt 552  Q
    ||||||||||||||||||||| ||||||||||||  ||||  ||||||||||| |||||||||||  |||||||||||||||||||||| |  |||||||    
T  10470537 ttctattgagtgcattgtaatcaacttttctacttatacttatgctgttacgactgacaggtacatcagatggaacaataataattttacaagtgttatt 10470438  T
Q  553 cttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggtt 652  Q
    ||||||||||||| ||| | ||||||||||||| ||| ||  | ||||||| |||||||| ||||||||  || |||||| |||||||||||||||||||    
T  10470437 cttaatgtggatgatagctctcatggtactcctgttagaaacgggtttggtcgggtcttgtgtaatgacgcagatttatttcttgcgggcttctccggtt 10470338  T
Q  653 ttattccaggttcaaatgacatcctgctaggtgagctttatgct 696  Q
    |||||||||||||| || ||| |||  |||||||||||| ||||    
T  10470337 ttattccaggttcagattacaccctattaggtgagctttctgct 10470294  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 299 - 429
Target Start/End: Complemental strand, 10484545 - 10484415
Alignment:
Q  299 ttttagtaaatttcacggtaaattcaaagaagaaaatttgtgtattagtacaccgaatctttaaattaatacataataaatggattgttttaagnnnnnn 398  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          
T  10484545 ttttagtaaatttcacggtaaattcaaaaaacaaaaattgtgtattagtacacggaatctttaaattaatacataataaatggattgttttaagaaaaaa 10484446  T
Q  399 nttctatcatttataattatataaccaaatc 429  Q
     ||||||||||||||||| ||||||||||||    
T  10484445 attctatcatttataattgtataaccaaatc 10484415  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 10474463 - 10474367
Alignment:
Q  9 gaggagcagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagagattttactgcgagaaaggatagtacttcaaccaccagttc 105  Q
    ||||| ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10474463 gaggatcagagatgagagtgttaaaaaatttgttgacgcatctgaaccgcataagagattttactgcgagaaaggatagtacttcagccaccagttc 10474367  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 700 - 786
Target Start/End: Complemental strand, 10470250 - 10470162
Alignment:
Q  700 aacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatgt--ttctcatccaa 786  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||  |||||||||||    
T  10470250 aacttgcttgctattctgattctcttgcttgcgtcaaccttattaatggtcccatcgtgagataccatatctatgtggttctcatccaa 10470162  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 10463521 - 10463425
Alignment:
Q  9 gaggagcagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagagattttactgcgagaaaggatagtacttcaaccaccagttc 105  Q
    ||||| |||| |||||||||||  || ||||||||||||| ||||| |||||||||| |||||||||||| | ||||||||||||| ||||||||||    
T  10463521 gaggatcagatatgagagtgttaaaaaatttgttgacgcacctgaatcgcataagaggttttactgcgagcagggatagtacttcagccaccagttc 10463425  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 509 - 675
Target Start/End: Original strand, 38224312 - 38224478
Alignment:
Q  509 acaggtacaagagatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctatta-aaattgagtttggtgggg 607  Q
    |||||||||  |||||||| ||||||||| ||   | || |||||||||||||||||||||||| ||||  |||||||||| || |||| |||||||| |    
T  38224312 acaggtacatcagatggaataataataatatttcgggtgctattcttaatgtggatggtagttagcatgacactcctattagaacttga-tttggtggag 38224410  T
Q  608 tcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccaggttcaaatgacatc 675  Q
    ||||||| ||||||  |||| ||||| ||||||| ||||| ||||| |||||||| |||  |||||||    
T  38224411 tcttgcgcaatgactcaggtatattcattgcgggtttctctggtttcattccaggatcatttgacatc 38224478  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 699 - 774
Target Start/End: Complemental strand, 5204110 - 5204035
Alignment:
Q  699 gaacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatg 774  Q
    |||||| ||||||||||||||||||||||||| |||||||||||  |||| ||||||||||| | |||||||||||    
T  5204110 gaactttcttgctattctgattctcttgcttgcatcaaccttatatatggccccattgagaggttccatatctatg 5204035  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 696
Target Start/End: Complemental strand, 5204386 - 5204153
Alignment:
Q  464 gcattgtaataaacttttctactcctactcctgctgttacgagtgacaggtacaagagatggaac-aataataattttaaagatgttattcttaatgtgg 562  Q
    |||||||||| |||| |||  || || || ||||| |||| | | |||||||||  ||||||||  ||||| ||||||  || || ||||||||||||||    
T  5204386 gcattgtaatcaactattcaccttctgcttctgcttttacaactaacaggtacattagatggaaataataacaatttttcaggtgctattcttaatgtgg 5204287  T
Q  563 atggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccagg 662  Q
    |||| ||||  || ||| ||||||| ||||  | ||||||||| |||||||||| | |   |||| |||||||| | ||||||||  |||  ||||||||    
T  5204286 atggaagttgccacggttctcctatcaaaaccgggtttggtggagtcttgcgtactcatgcaggtatattcctttcaggcttctctagttggattccagg 5204187  T
Q  663 ttcaaatgacatcctgctaggtgagctttatgct 696  Q
    |||| |||||||| |||||||||| |||| ||||    
T  5204186 ttcagatgacatcttgctaggtgatctttctgct 5204153  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 126 - 255
Target Start/End: Complemental strand, 10463380 - 10463247
Alignment:
Q  126 ccatggagccgccttgcatgtggttaggtagaagaattaaccctagaaag----tgaa-ccaaaacgaagcaaccaggttgaatattgcgacgttttaat 220  Q
    |||||| |||||| |||||||||| |  |||||||||||||||||| |||    |||| ||||||| ||||||||| |||||||  ||| || |||||||    
T  10463380 ccatggtgccgccgtgcatgtggtcacctagaagaattaaccctagcaagcaactgaaaccaaaactaagcaaccaagttgaatcgtgcaac-ttttaat 10463282  T
Q  221 atttgtttctttctgggctgttgtataatgggttg 255  Q
    || ||||||||| |||||| |||||||||||||||    
T  10463281 atatgtttctttttgggcttttgtataatgggttg 10463247  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 495 - 687
Target Start/End: Complemental strand, 51303384 - 51303192
Alignment:
Q  495 tgctgttacgagtgacaggtacaagagatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctattaaaatt 594  Q
    ||||||||| | | |||||||||  ||||||||  |||| ||||||  || || |||||||||||||||||| |||| || |||| |||| |||||||      
T  51303384 tgctgttacaactaacaggtacatcagatggaaagataacaatttttcaggtgctattcttaatgtggatggaagttgtcttggttctccaattaaaacc 51303285  T
Q  595 gagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggttttattccaggttcaaatgacatcctgctaggtgag 687  Q
    | ||||||||| |||||||||  |||   |||| ||||||||  | ||||||   |||  |||||||||||| |||||||| |||||||||||    
T  51303284 gggtttggtggagtcttgcgtgctgatgcaggtatattccttttgtgcttctttagttgcattccaggttcatatgacatcttgctaggtgag 51303192  T

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Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 621
Target Start/End: Original strand, 38945514 - 38945615
Alignment:
Q  520 agatggaacaataataattttaaagatgttattcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatg 619  Q
    |||||||| ||||||||| ||  || || |||||||||||||||||||||||  ||||  |||| ||||| ||  ||||||||||| |||||||||||||    
T  38945514 agatggaataataataatatttcaggtgctattcttaatgtggatggtagttgccatgacactcatattagaaccgagtttggtggagtcttgcgtaatg 38945613  T
Q  620 ac 621  Q
    ||    
T  38945614 ac 38945615  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 707 - 760
Target Start/End: Original strand, 40789097 - 40789150
Alignment:
Q  707 ttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagag 760  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  40789097 ttgctattctgattctcttgcttgcatcaactttattaatggccccattgagag 40789150  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 8437955 - 8438005
Alignment:
Q  15 cagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagag 65  Q
    ||||||||||||||||| |||||||||||| ||| |||||||| |||||||    
T  8437955 cagagatgagagtgttgaaagatttgttgaggcacctgaaccggataagag 8438005  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 8444260 - 8444310
Alignment:
Q  15 cagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagag 65  Q
    ||||||||||||||||| |||||||||||| ||| |||||||| |||||||    
T  8444260 cagagatgagagtgttgaaagatttgttgaggcacctgaaccggataagag 8444310  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 10481421 - 10481371
Alignment:
Q  15 cagagatgagagtgttggaagatttgttgacgcatctgaaccgcataagag 65  Q
    ||||||||||||||||| || | ||||||||||| ||||| ||||||||||    
T  10481421 cagagatgagagtgttgtaaaacttgttgacgcacctgaatcgcataagag 10481371  T

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Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 552 - 696
Target Start/End: Complemental strand, 35061265 - 35061121
Alignment:
Q  552 tcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgacataggtttattccttgcgggcttctccggt 651  Q
    |||||| ||||||||||| | ||||||||||||| ||| ||  | |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |    
T  35061265 tcttaacgtggatggtagctgtcatggtactcctgttagaaccgggtttggtggggtcttgcgtaatgacacaggtttattccttgcaggcttctccgat 35061166  T
Q  652 tttattccaggttcaaatgacatcctgctaggtgagctttatgct 696  Q
    ||||||||||||||  |||| ||||||||||||||||||| ||||    
T  35061165 tttattccaggttcggatgatatcctgctaggtgagctttctgct 35061121  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 35061077 - 35061005
Alignment:
Q  700 aacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatcta 772  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||    
T  35061077 aacttgcttgctattctgattctcttgcttgcatcaaccttattaatggtcccattgaaaggtaccatatcta 35061005  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 774
Target Start/End: Complemental strand, 43111840 - 43111769
Alignment:
Q  703 ttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatg 774  Q
    |||||||||||| ||||||||||| ||| || || ||||||||||   |||||||||| |||||||| ||||    
T  43111840 ttgcttgctattgtgattctcttgtttgcattaatcttattaatgactccattgagaggtaccatatatatg 43111769  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 541
Target Start/End: Complemental strand, 35061576 - 35061487
Alignment:
Q  453 ttctattgagtgcattgtaataaacttttc-tactcctactcctgctgttacgagtgacaggtacaagagatggaacaataataatttta 541  Q
    |||||||||| || ||||||||| |||||| | || || || || |||||| || |||||||||||  | ||||||||||||||||||||    
T  35061576 ttctattgagagctttgtaataagcttttcctccttctgcttctactgttatgactgacaggtacatcaaatggaacaataataatttta 35061487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 621
Target Start/End: Complemental strand, 1929206 - 1929131
Alignment:
Q  546 tgttattcttaatgtggatggtagttatcatggtactcctattaaaattgagtttggtggggtcttgcgtaatgac 621  Q
    |||| |||||||||||||||||||||    ||| |||||||||| || || || |||||| |||||||||||||||    
T  1929206 tgttgttcttaatgtggatggtagttgcgttggcactcctattagaactgggtctggtggagtcttgcgtaatgac 1929131  T

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