View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_11 (Length: 407)
Name: NF5759_low_11
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_11 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 8071427 - 8071021
Alignment:
| Q |
1 |
catcagcgcatttacatttacctcccaaaaactcaggcaattcactgacaaagaaaacacaatggaaattaagtcttaaagatggacaaagaaatacgag |
100 |
Q |
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| T |
8071427 |
catcagcgcatttacatttacctcctaaaaactcaggcaattcactgacaaagaaaacacaatggaaattaagtcttaaagatggacaaagaaatacgag |
8071328 |
T |
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| Q |
101 |
gagcgtaaaaataaagaatcaatttcagattatttgtcaaatgaagaaaccagatactgagatattcaatgcatttatgaactcacctttcgtcaattat |
200 |
Q |
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| T |
8071327 |
gagcgtaaaaataaagaatcaatttcagattatttgtcaaatgaagaaaccagatactgagatattcaatgcatttatgaactcacctttcgtcaattat |
8071228 |
T |
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| Q |
201 |
ttcaagcaacttactatcatacttgttgccaagaacctgatcatatataaattaatataagtttcaatgacacaattttccaaacacaacaagcagaatt |
300 |
Q |
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| T |
8071227 |
ttcaagcaacttactatcatacttgttgccaagaacctgatcatatataaattaatataagtttcaatgacacaattttccaaacacaacaagcagaatt |
8071128 |
T |
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| Q |
301 |
aggataaggtctataggctcacattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcatt |
400 |
Q |
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| T |
8071127 |
aggataaggtctataggctcacattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcatt |
8071028 |
T |
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| Q |
401 |
gatgatg |
407 |
Q |
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| T |
8071027 |
gatgatg |
8071021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 407
Target Start/End: Original strand, 32616380 - 32616469
Alignment:
| Q |
318 |
ctcacattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
407 |
Q |
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| T |
32616380 |
ctcacatggatttttgcggtggtctttgggtcaaggaaagatttaacagtgttccacaacattctgaatccagaacctgcattgatgatg |
32616469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 32616239 - 32616297
Alignment:
| Q |
183 |
tcacctttcgtcaattatttcaagcaacttactatcatacttgttgccaagaacctgat |
241 |
Q |
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| T |
32616239 |
tcaccttgcatcaattatttcaagcaacttgctttggtacttgttgccaagaacctgat |
32616297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 5327884 - 5327798
Alignment:
| Q |
321 |
acattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
407 |
Q |
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| T |
5327884 |
acatggatttttgaggtggtcttgggatctaggaatgactttacagtgttccacaatagcctaaatccagaaccagcattgatgatg |
5327798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 407
Target Start/End: Complemental strand, 54774046 - 54773960
Alignment:
| Q |
321 |
acattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
407 |
Q |
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| T |
54774046 |
acatggatttttgaggtggtcttgggatctaggaatgactttacagtgttccacaatagcctaaatccagaaccagcattgatgatg |
54773960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 407
Target Start/End: Complemental strand, 26639429 - 26639361
Alignment:
| Q |
339 |
gtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
407 |
Q |
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| T |
26639429 |
gtcttgggatcaaggaaggacttaacagtgttccacaaaatcctaaatcccgaaccagcattgatgatg |
26639361 |
T |
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