View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_low_15 (Length: 402)

Name: NF5759_low_15
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_low_15
NF5759_low_15
[»] chr4 (3 HSPs)
chr4 (84-387)||(37224336-37224639)
chr4 (7-88)||(37224667-37224748)
chr4 (22-89)||(22130069-22130139)
[»] chr8 (1 HSPs)
chr8 (13-88)||(21216112-21216190)
[»] chr3 (1 HSPs)
chr3 (13-88)||(1778670-1778747)
[»] chr1 (2 HSPs)
chr1 (7-61)||(34563119-34563173)
chr1 (7-56)||(978864-978913)
[»] chr5 (1 HSPs)
chr5 (13-70)||(9515794-9515851)
[»] scaffold0583 (1 HSPs)
scaffold0583 (14-70)||(2073-2129)
[»] chr6 (1 HSPs)
chr6 (13-88)||(24983458-24983536)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 84 - 387
Target Start/End: Complemental strand, 37224639 - 37224336
Alignment:
Q  84 gagtaaccattaggacatgatggtttgtattctaaattatccnnnnnnnngtgcggttgtagggaaacatccgcagagtacagcagaaaaacatggaaat 183  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224639 gagtaaccattaggacatgatggtttgtattctaaattatccttttttttgtgcggttgtagggaaacatccgcagagtacagcagaaaaacatggaaat 37224540  T
Q  184 taggtagagaacttctcaaaggaatatcagaaagtttgggtttggaagtcaactatatagacaaaacaatgaatctagattctggtttacaaatgttggc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224539 taggtagagaacttctcaaaggaatatcagaaagtttgggtttggaagtcaactatatagacaaaacaatgaatctagattctggtttacaaatgttggc 37224440  T
Q  284 agcaaatctttatcctccttgtcctcaacctgagcttgcaatgggaatgcccccacattccgatcatggcctcttgaacctcctcatccagaatggagtt 383  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37224439 agcaaatctttatcctccttgtcctcaacctgatcttgcaatgggaatgcccccacattccgatcatggcctcttgaacctcctcatccagaatggagtt 37224340  T
Q  384 agtg 387  Q
    ||||    
T  37224339 agtg 37224336  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 37224748 - 37224667
Alignment:
Q  7 aagaatatgattagttgtgttcatttcaacgataaaataagtttcatttacaaaaacatccttaattgtagtaagtggagta 88  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  37224748 aagaatatgattagttgtgtttatttcaacgataaaataagtttcatttacaaaaccatccttagttgtagtaagtggagta 37224667  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 22130139 - 22130069
Alignment:
Q  22 tgtgttcatttcaacgataaaataagtttcatttacaaaaacatcc---ttaattgtagtaagtggagtaa 89  Q
    |||||| ||||||| | || ||| ||| ||||||||||||||||||   ||||||||||| ||||||||||    
T  22130139 tgtgttgatttcaatggtataattagtatcatttacaaaaacatccttattaattgtagttagtggagtaa 22130069  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 21216112 - 21216190
Alignment:
Q  13 atgattagttgtgttcatttcaacgataaaataagtttcatttacaaaaacatcc---ttaattgtagtaagtggagta 88  Q
    ||||||| ||||||| ||||||| | |||||| |||| ||||||| |||||||||   ||||||||||| |||||||||    
T  21216112 atgattaattgtgttgatttcaatggtaaaattagttgcatttactaaaacatccttattaattgtagttagtggagta 21216190  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 1778747 - 1778670
Alignment:
Q  13 atgattagttgtgttcatttcaacgataaaataagtttcatttacaaaaacatcctta--attgtagtaagtggagta 88  Q
    ||||||| ||||||| ||||||| |||||||| | |  ||||||| ||||||||||||  |||||||| |||||||||    
T  1778747 atgattaattgtgttgatttcaatgataaaattaatgacatttactaaaacatccttattattgtagttagtggagta 1778670  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 34563173 - 34563119
Alignment:
Q  7 aagaatatgattagttgtgttcatttcaacgataaaataagtttcatttacaaaa 61  Q
    ||||| ||||| |||| |||| |||||||||||||||| ||||||||||| ||||    
T  34563173 aagaaaatgatcagttttgttgatttcaacgataaaatgagtttcatttataaaa 34563119  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 978864 - 978913
Alignment:
Q  7 aagaatatgattagttgtgttcatttcaacgataaaataagtttcattta 56  Q
    ||||| ||||||||||||||| ||||||| ||||||||  ||||||||||    
T  978864 aagaaaatgattagttgtgttgatttcaatgataaaatgtgtttcattta 978913  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 9515851 - 9515794
Alignment:
Q  13 atgattagttgtgttcatttcaacgataaaataagtttcatttacaaaaacatcctta 70  Q
    ||||||| ||||||| ||||||| | |||||| ||| |||||||| ||||||||||||    
T  9515851 atgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaacatcctta 9515794  T

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Target: scaffold0583 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 2129 - 2073
Alignment:
Q  14 tgattagttgtgttcatttcaacgataaaataagtttcatttacaaaaacatcctta 70  Q
    |||||| ||||||| ||||||| |||||||| | | |||||||| ||||||||||||    
T  2129 tgattaattgtgttaatttcaatgataaaattaatatcatttactaaaacatcctta 2073  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 24983458 - 24983536
Alignment:
Q  13 atgattagttgtgttcatttcaacgataaaataagtttcatttacaaaaacatcc---ttaattgtagtaagtggagta 88  Q
    ||||||||||| ||| ||||||| | |||||| ||| |||||||| |||||| ||   ||||||||||| |||||||||    
T  24983458 atgattagttgagttgatttcaatggtaaaattagtgtcatttactaaaacacccttattaattgtagttagtggagta 24983536  T

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