View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_18 (Length: 389)
Name: NF5759_low_18
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 223 - 389
Target Start/End: Original strand, 9230968 - 9231135
Alignment:
| Q |
223 |
ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcatttcatttgtttcctttctatttggccacttgtccaatctctt |
322 |
Q |
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| T |
9230968 |
ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcatttcatttgtttcctttctatatggccacttgtccaatctctt |
9231067 |
T |
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| Q |
323 |
cactgtccatttcatattttgctta-ttactagctagaagctacttacaaaccttaaatttggttaac |
389 |
Q |
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| T |
9231068 |
caatgtccatttcatattttgcttatttactagctagaagctacttccaaaccttaaatttggttaac |
9231135 |
T |
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Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 9230748 - 9230878
Alignment:
| Q |
2 |
gtggagtagcaaaggggctggaacagggcctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaa |
101 |
Q |
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| T |
9230748 |
gtggagcaccaaaggggctggaacagggcctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaa |
9230847 |
T |
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| Q |
102 |
aggaagggttcccaatgctatgtgtagacta |
132 |
Q |
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| T |
9230848 |
aggaagggttcccaatgctatgtatagacta |
9230878 |
T |
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